Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01789 ATGGGAAGAGCACCTTGTTGTGAAAAGAATAATGGCCTCAAGAGAGGACCATGGACACCAGAGGAAGACAAAAAACTCATTGATTACATTCATAAACATGGTTATGGTAACTGGAGATTACTACCAAAGAATGCAgGATTACAAAGATGTGGAAAGAGTTGTCGTCTCCGTTGGACAAACTATCTTCGACCTGATATAAAGCGTGGTCGATTCtcttttgaagaagaagaaaccataatTCAGCTACATAGCATTCTCGGCAACAAGTGGTCTGCTATTGCTTCTAGATTACCGGGAAGAACAGATAATGAAATCAAGAATTACTGGAACACTCACATTAGGAAAAGATTATTAAGAATGGGAATTGATCCTGTGACACATAATCCAAGACTTGATCTTTTGGACTTTTCTTCTATCCTAAACTCATCTCTATCTCAAATGAACATTCAAAGACTAATTGGTACTCAACAATTAGTGAACCCTGATGAGATTCTAAAGTTTGCTTCATCACTCTTTTCCTCTCAAAATGGACAAGAGAATCATCACCAAATTgatcaaaatcaacaaattatCTCACACTTGGATCAAGAAGCTTGCAACATGTTGTTGAATAACCCAACTTGTGATGATTCAATGCCTTTCACTCAAACACACTTAGTTGAATCAAATGAGAATCTATACTCATCATTTTTGCCTCAATTTGGCTTCCAACAACAACATGAACATGCTCAATTAAGTGATTTACATTGCAATGGAATTGCTTCAAGTACTATGACAGAGAATTTTGTTCATCAGTTACCAAGTTATGATTACTTAAGTTCTGATTATAATGGAAATGATCTAATTATGGACCCTCATATATCACAAACCTCAAACTTTCATTCCAATAACAACAATCAGAATTTCAATTTCGCTTCGGTTCTATCTACGACGCCTTCATCGAGTACCACACCGCTGCATTCAAATTCGACGAATATCAATGGAAGCAGTATCACTGAAGATGAGACAGAGAGCTATGttagtagcaacatgtttcaatttcaaatctCAGATATCTTAGGTGTGAATGAGTTCATGCAGTAA 1083 0.3435 MGRAPCCEKNNGLKRGPWTPEEDKKLIDYIHKHGYGNWRLLPKNAGLQRCGKSCRLRWTNYLRPDIKRGRFSFEEEETIIQLHSILGNKWSAIASRLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHNPRLDLLDFSSILNSSLSQMNIQRLIGTQQLVNPDEILKFASSLFSSQNGQENHHQIDQNQQIISHLDQEACNMLLNNPTCDDSMPFTQTHLVESNENLYSSFLPQFGFQQQHEHAQLSDLHCNGIASSTMTENFVHQLPSYDYLSSDYNGNDLIMDPHISQTSNFHSNNNNQNFNFASVLSTTPSSSTTPLHSNSTNINGSSITEDETESYVSSNMFQFQISDILGVNEFMQ 360
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01789 360 Gene3D - 70 117 - -
Tsu02g01789 360 SMART sant 14 64 IPR001005 -
Tsu02g01789 360 SMART sant 67 115 IPR001005 -
Tsu02g01789 360 SUPERFAMILY Homeodomain-like 12 109 IPR009057 -
Tsu02g01789 360 ProSiteProfiles Myb-like domain profile. 10 62 IPR001005 -
Tsu02g01789 360 Pfam Myb-like DNA-binding domain 68 112 IPR001005 -
Tsu02g01789 360 Pfam Myb-like DNA-binding domain 15 62 IPR001005 -
Tsu02g01789 360 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 353 - -
Tsu02g01789 360 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu02g01789 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 67 117 IPR017930 -
Tsu02g01789 360 CDD SANT 70 113 IPR001005 -
Tsu02g01789 360 Gene3D - 15 67 - -
Tsu02g01789 360 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 10 66 IPR017930 -
Tsu02g01789 360 PANTHER TRANSCRIPTION FACTOR MYB41 1 353 - -
Tsu02g01789 360 CDD SANT 17 62 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01789 Tsu-Chr2 16039238 16040593 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01789 1 359 MYB Transcription Factor Family AT4G21440 52.785 3.01e-110 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g01789 Myb_DNA-binding 4.7e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01789 K09422 - gmx:100810143 403.675
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01789 02 16039238 16040593 Tsu08g04173 08 59879352 59880706 PCT