Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01787 ATGGCGAGAAAATCCTCATCGGCGAACGAGGAGATTCTACCGGACGAACTCCGGTGCGGACGAACCGACGGGAAACAATGGAGATGCAAGCGGAGAGTGATGGATAATCTCAAACTCTGCGAGATTCACTATCTTCAAGGTAAGCATCGTCAATACAGAGAGAAAGTTCCTGAGTCTTTGAAGCTTCAGAGAAAGCGTAAGAACAACGACGAAGCTACGGATGCTACAGAAACTGTTGTAATTGATAATGCGGAAGCTAGGGTACCGAGGGAGCTGAAAATGGAGCTgaggaagaacaagaagaagaaagtgaagCTCGCAGAGAGTTCGGAATCGGTTACGGTAACCGATTCAGCTTCAGGTTCTGGTTCTGTTCCGGTTAGGAAGAAGACAATGAAGCAATGTGATTCGCAATTGGATCTAATAAGAATGGTTTTGgaaagagaagttgagaagagaaaaaagaataacaatgagaataagaagaataagaaaaagaagaagaaattgaagaaaaaagagattAAATTAGAAGAAGTTGAATTCAATGAAGGAGAGTTGAGAAGAGAGTTACCAAATGGTGTTATGGAAATATCACCAGCTTCAACACCACATGATTATAACAATGTGAATTCTCATTGTGATGTGAAAGTTGGTGTTGATCATAATAAGGTTGTAGCTGTAACGCCGCGTAACTTCAGGTCGAAGAATGTTGATAGGGTTGCTGTTGGAAAGTTGCAAGTTGTGCCTTATGGACCAAGCTTGAAGAAGGTGATTACTAAGAGGAAGTGTCACTTGTGCCAGAGAAGTGAATCGTTGAATCTCGTCCAGTGTTCTAGCTGTAACAAGGAGTTTTTCTGCTTTGATTGCATTAGAGAGCGGTATCTTGACACTAGAAAAGAAGTTAAGAAGGCGTGCCCAGTTTGTCAAGGAACTTGCACTTGTAAGGTCTGCTTGGCAGGCCAATGCAACGGCAGTGAAAGTAAGTCCTATTTATCTTGTAAAAGTAGAGTTGATAGAATACTTCATTTTCACTATTTGATCTGCATGCTCCTTCCGGTACTAAAGAGAATAAGTGAAAATCTAGAAACTGAGCTAGAAACAGAAGCAAGAATCAAAGGTAGTTATTTTCATTCTTCTAACATTGATGTTTTACGAAGCAGCTTTTGTTCGTTACAAATGTATCTTAAGATGCCATGTTGTGTAACAGGGAAAAATATTTCTGATATTCAAATAAAGCAGGTTGAATTTGGTTACAGTGAAAATATTTATTGCAATCACTGCAAAACACCCATCCTGGATCTCCATAGAAGCTGTGCTAGTTGTTCGTATAGCCTGTGCTTAAGTTGTTGTGAGAAATCATCTCAAGGAAGAACTTCTGGAGAAATTAACTCATCAATGTTGAAGCTACCTGATCAAATGAAAGCTTGTGTTGACATTGAGGGCCATATTTTGGATCAGAAGGACATTTCTTGTGGCAATTTAACTCCTACTTTAACATTGCCTGAGGAGACAAATTGTAATGATATTGATAAACTGTCATGCCCTCCTACGTTAACATTGCATGAGGACACAAATTGTAATGATATTGAAAAACTGTCATGCCCTCCTACGTTAACATTGCATGAGGAGACAAATTGTAATGATAATGAAAAAGTGTCATGCCCTCCTACGGAGCTTGGTGGTTGTGGTACAGGCCTGCTAGATTTAAGATGCATTTTTCCCATGACTTTGCTCAAAGAGATGGAAGTAAAGGCAGAAGAAATTGTTTGCAGCTATGACTTTCCTGACACTTTGGATAAAAGTTCAAGCTGCTCACTGTGTGTTGACACCGACCTCAATAGTAACCGATATAACCAGTTGCAGAAAGCAGCTGAGAGAGAAGATTCGTCAGATAATTGCTTGTTCTGTCCCACAGTTTTGGACATCAATGGTAGTAACTTTGAGCACTTTCAGAAACACTGGGGAAAAGGCCATCCTATAGTGGTCCAAGATGTGCTCCAGAGTACATCAAACCTCAGTTGGAATCCACTGTTCATGTTCTGTACTTATCTCGAGCAGAGCATTACAAAGTATGAGAATAATAAAGAGTTACTCGAATCCTGTTTGGATTGGTGCGAGGTGGAAATAAACATTAGGCAGTATTTTACTGGCTCTCTCAAATGTCGTCCTCAGAGAAACACTTGGCATGAGATGCTGAAACTGAAGGGATGGCTGTCTTCCCAAGTATTCAAAGAGGAGTTTCCCGCCCATTTTTCTGAAGTAATTGATGCTCTACCAGTTCAAGAATACATGAATCCCGTGTCTGGTCCTCTGAATTTAGCTGCAAATTTGCAACATGGGAGTGTGAAACATGACATTGGGCCATATGTCTATATTTCGTATGGTTGTGCTGACATAGAAGCTGATTCTGTGACAAAACTCTACTGCGACTCATATGATGTGGTTAATATTATGACACATTCTGCGGATGTCCCTCTCTCTACAGAACAGCttacaaaaataagaaaattactGAAAAAGCACAAAGCTCTGTGTCAAGTGGAGTCTGTTGATACTGAGCAGTTACCTGAACAGGAAGTGAAAGGAATGGCATTATCACATGATGAAGAAATGGAACAAAAAGGTTCGCGGAGTATGGGGAAAGAAGGAATGGAGTTTTTAAGGAGAGTCGATAGGACATCTTGCATCTCCTCAACTGGAACTACAAAAGCTTCTACCCAAAGTATAGACAACAATATTTGCCAGGATGGAGAGCGCGGCATCTTTTCTGATTCTGAACCCTCTCTTGATGGAACTGTTCATACCACCAATTTGTCAGAACACAATAATCCTAGAAGTCCCTCTGAAAGCTCCAACagttataagaaaaagtttccTGAGCATTCAGGTGCCCAGTGGGATGTCTTTCGTAGACAAGATGTGCCGAAGCTCAtagaatatattaaaaaacactGTGATGAACTTACTTATACCCATGACTCTCACAAGAAGATGGTTCATCCGATTCTAGATCAGAGCATTTTTCTTGACAATACTCACAAAAAGAGACTGAAGGAGGAGTTTAAGATTGAACCATGGACTTTCCAGCAACATGTTGGAGAAGCTGTTATCATTCCTGCTGGATGTCCATACCAGATAAGGAATTCTAAGTGTTGTGTCCATGCGGTATTGGAATTTGTGTCCCCTGAAAATGTTACCGAGTGTATCCAGTTGATTGATGAGCTCAGACAGTTACCTGAAGACCAtaaagcaaaagtagacaaacTGGAGGTGAAGAAAATGGCACTACATACTATGAGTACAGCAATTAAAGAAATACGCCAGCTTACATCCAAAACATAA 3345 0.3871 MARKSSSANEEILPDELRCGRTDGKQWRCKRRVMDNLKLCEIHYLQGKHRQYREKVPESLKLQRKRKNNDEATDATETVVIDNAEARVPRELKMELRKNKKKKVKLAESSESVTVTDSASGSGSVPVRKKTMKQCDSQLDLIRMVLEREVEKRKKNNNENKKNKKKKKKLKKKEIKLEEVEFNEGELRRELPNGVMEISPASTPHDYNNVNSHCDVKVGVDHNKVVAVTPRNFRSKNVDRVAVGKLQVVPYGPSLKKVITKRKCHLCQRSESLNLVQCSSCNKEFFCFDCIRERYLDTRKEVKKACPVCQGTCTCKVCLAGQCNGSESKSYLSCKSRVDRILHFHYLICMLLPVLKRISENLETELETEARIKGSYFHSSNIDVLRSSFCSLQMYLKMPCCVTGKNISDIQIKQVEFGYSENIYCNHCKTPILDLHRSCASCSYSLCLSCCEKSSQGRTSGEINSSMLKLPDQMKACVDIEGHILDQKDISCGNLTPTLTLPEETNCNDIDKLSCPPTLTLHEDTNCNDIEKLSCPPTLTLHEETNCNDNEKVSCPPTELGGCGTGLLDLRCIFPMTLLKEMEVKAEEIVCSYDFPDTLDKSSSCSLCVDTDLNSNRYNQLQKAAEREDSSDNCLFCPTVLDINGSNFEHFQKHWGKGHPIVVQDVLQSTSNLSWNPLFMFCTYLEQSITKYENNKELLESCLDWCEVEINIRQYFTGSLKCRPQRNTWHEMLKLKGWLSSQVFKEEFPAHFSEVIDALPVQEYMNPVSGPLNLAANLQHGSVKHDIGPYVYISYGCADIEADSVTKLYCDSYDVVNIMTHSADVPLSTEQLTKIRKLLKKHKALCQVESVDTEQLPEQEVKGMALSHDEEMEQKGSRSMGKEGMEFLRRVDRTSCISSTGTTKASTQSIDNNICQDGERGIFSDSEPSLDGTVHTTNLSEHNNPRSPSESSNSYKKKFPEHSGAQWDVFRRQDVPKLIEYIKKHCDELTYTHDSHKKMVHPILDQSIFLDNTHKKRLKEEFKIEPWTFQQHVGEAVIIPAGCPYQIRNSKCCVHAVLEFVSPENVTECIQLIDELRQLPEDHKAKVDKLEVKKMALHTMSTAIKEIRQLTSKT 1114
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01787 1114 Coils Coil 147 190 - -
Tsu02g01787 1114 ProSiteProfiles WRC domain profile. 13 59 IPR014977 -
Tsu02g01787 1114 MobiDBLite consensus disorder prediction 150 172 - -
Tsu02g01787 1114 MobiDBLite consensus disorder prediction 921 959 - -
Tsu02g01787 1114 PANTHER PROTEIN B160 9 387 - -
Tsu02g01787 1114 Pfam JmjC domain, hydroxylase 963 1055 IPR003347 -
Tsu02g01787 1114 Gene3D Cupin 639 1086 - -
Tsu02g01787 1114 MobiDBLite consensus disorder prediction 929 954 - -
Tsu02g01787 1114 ProSiteProfiles JmjC domain profile. 767 1077 IPR003347 -
Tsu02g01787 1114 ProSiteProfiles Zinc finger RING-type profile. 264 310 IPR001841 -
Tsu02g01787 1114 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 9 387 IPR045109 GO:0032454|GO:0033169
Tsu02g01787 1114 PANTHER PROTEIN B160 397 1113 - -
Tsu02g01787 1114 Pfam WRC 14 55 IPR014977 -
Tsu02g01787 1114 SUPERFAMILY Clavaminate synthase-like 642 1105 - -
Tsu02g01787 1114 MobiDBLite consensus disorder prediction 109 127 - -
Tsu02g01787 1114 PANTHER JMJC DOMAIN-CONTAINING HISTONE DEMETHYLATION PROTEIN 397 1113 IPR045109 GO:0032454|GO:0033169
Tsu02g01787 1114 SMART cupin_9 748 1077 IPR003347 -
Tsu02g01787 1114 MobiDBLite consensus disorder prediction 158 172 - -
Tsu02g01787 1114 MobiDBLite consensus disorder prediction 99 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01787 Tsu-Chr2 16013597 16019424 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01787 8 83 GRF Transcription Factor Family AT4G37740 34.211 1.51e-06 50.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Tsu02g01787 JmjC 7.2e-10 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01787 K15601 - gmx:100810673 1354.35
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01787 02 16013597 16019424 Tsu08g04175 08 59899350 59904316 PCT