Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01786 ATGGCGTCGTCACTCCCACACTTAGACGACGATTCTGTCTCCCCTTCCCCCCGCTCCGATCACTTCCATGACGCATCTCCACGTGTCCGCTTCATGTGTAGTTTCGGCGGTAAAATCCTCCCTCGTCCCTCCGACAATCAGCTCCGTTACGTCGGCGGCGACACCCGAATCGTCGCCGTTAACCGTTCCATTTCATTCTCCGCCCTTGTCCACAAACTCTCTAAACTCTCCGGCATGACTAACATAACAGCAAAATACCAACTTCCAAATGAAGACTTAGACGCTTTGATTACAGTAACAACAGATGAAGATGTAGATAACATGATAGACGAATACGACCGCGTTTCACTGAATGAAAACCCAAGAGCAGCTCGGTTAAGACTCTTTCTTTTTCCAGAAGGAGAAGATTCTAGAACCAATAGTATTAGCTCACTCTTAAACGGTTCAACTAAAAGAGAAAATTGGTTTATGGATGCTTTAAACGGTGGCGTTTCAGGACTTGAACGAGGTCGTTCAGAAGCTTCTTCTATGGTTTCTGAAGTACCCGATTATTTATTCGGGTTGGATAATAACTCTGAAGAAACTCAACAACAGAATCGAGAATTATTACGACCTAAAGAACGAAGCGTTCTTCAACAATTGGATAATGTTTCTAATTCGGATCCGGGTTCTCCTGCTCCGGTTGTTTCTTCTCCTTTTTGTTCTACTTCTTCTGCTTCTATTCCGAATCTTCCACCGGTTAAAACTAAACCAGAAAACCCGGTTTATGAACCGGATTTTAAAACAAGTCAAATTGAAACTGAAACGGTTTTGCAACCACAATTGAAATTGGGTAATTACCAGATTAACCCTGGAGTTCACTACCCTCCTCATTCTCAAGTTCAACCACAACAACTACAAGAAGCTGCTTATTCGGGTCATCATCATGGACAACCTGTTCCGGTTTATTATATTCAAGGTTCGGTTCAACCCGGGAATGTGCCGGTTCAGCAAGTTCATATGCAAGGACATTATCCTCCATACGTTCAACAACCGTATCATACGGTTATGCAACATCAGGTTCCAATTGGGTATCATCAATTGGTTCCGGGTTCGGGTCAAGTATATGGGGCGGGTATGAGGCATATGGCTCCGGTGCAGCCCTATAGTCCTACCGCGGTGGTTCACGACGGTTTAAAACAGCAAGTGTATCAAGGTGTGCAGAACCCAGGTCCGGTTCCGGTTTACCAGGGGATGCCCCCGGTGACAGGCGGGGATGAACAGCAGAGAGGTGGAACGGGTCGGGGCACCAACTCGCCACATAATTGA 1308 0.4587 MASSLPHLDDDSVSPSPRSDHFHDASPRVRFMCSFGGKILPRPSDNQLRYVGGDTRIVAVNRSISFSALVHKLSKLSGMTNITAKYQLPNEDLDALITVTTDEDVDNMIDEYDRVSLNENPRAARLRLFLFPEGEDSRTNSISSLLNGSTKRENWFMDALNGGVSGLERGRSEASSMVSEVPDYLFGLDNNSEETQQQNRELLRPKERSVLQQLDNVSNSDPGSPAPVVSSPFCSTSSASIPNLPPVKTKPENPVYEPDFKTSQIETETVLQPQLKLGNYQINPGVHYPPHSQVQPQQLQEAAYSGHHHGQPVPVYYIQGSVQPGNVPVQQVHMQGHYPPYVQQPYHTVMQHQVPIGYHQLVPGSGQVYGAGMRHMAPVQPYSPTAVVHDGLKQQVYQGVQNPGPVPVYQGMPPVTGGDEQQRGGTGRGTNSPHN 435
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01786 435 Gene3D - 49 132 - -
Tsu02g01786 435 Pfam PB1 domain 45 132 IPR000270 GO:0005515
Tsu02g01786 435 PANTHER OCTICOSAPEPTIDE/PHOX/BEM1P 5 428 - -
Tsu02g01786 435 SMART PB1_new 43 131 IPR000270 GO:0005515
Tsu02g01786 435 MobiDBLite consensus disorder prediction 406 435 - -
Tsu02g01786 435 SUPERFAMILY CAD & PB1 domains 44 140 - -
Tsu02g01786 435 MobiDBLite consensus disorder prediction 1 23 - -
Tsu02g01786 435 CDD PB1_UP2 32 131 - -
Tsu02g01786 435 PANTHER OS05G0427100 PROTEIN-RELATED 5 428 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01786 Tsu-Chr2 16002870 16004582 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01786 18 175 MAP Kinase Kinase Kinase AT3G46920 38.994 1.04e-29 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01786 - - aprc:113858359 586.26