Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01778 atGAAAAGTTTCAGTTTCTCAACACTCTTTCTCTTCTGTTTCTCAACTTCAACCATTTTCTTCTCAACACCTTCAATCtctgcttcttcttctgataCCTTAACAACAACCCAAATCCTTAAAATCAACGAAACCCTCTTGTCACCAACAGGAATTTTCCAACTCAGTTTCTTTTCCTACGACAAATTTTCCTGGTACTTAGGAATACGTTACAACATCGACCATGATAACAGAACAGTGGTTTGGGTTGCAAACAGAAACACCCCAATTCAAAATCCCAATTCCTTTCTCAAATTAACCGACACAGGTCTTATTATCATCGATCAATCCAATAAAACCATCTGGGCTACtgaaaaaatcaataaaaattcaacCTTTAACAAAAACCCAATTCTTCAGATTCTTGATTCTGGGAATTTGGTTATATCAGAATCACCAAATGAGAACGACCCAACGAAGTTTTTATGGcaaagttttgattttccaaCAGATACTTTGTTACCTGGTATGAAACTTGGTTGGAATTTTGATACAAACAGAGAAACACACATAAACTCATGGAAAGTAACAGATCAAGATCCTTCAATTGGAGATATATCTTTCAAGATGGATTATCATGGTGTTCCAGAAATTTTTCTTTGGAACAAAAATAAGAGAGTTTATAGAAGTGGACCATGGAATGGTAAAAGATTCAGTGGTGTACCTGAGATGCAACCATTAAcagattcaattcaattcaGTTTTGTTCAGAATGAACATGAAGTTTACTATACATTTTCAATTGGGAATGAATCATTGTTTTCAAGACTCAGTGTTGATTCATTAGGTGAACTTCAAAGACTTACATGGATACATAGTAGAAAATTTTGGACTAAATTTTGGTATGCACCAAAAGATCAAtgtgataattataaagaatgTGGTCCATTTGGTATATGTGATACAAATGCTTCACCTGTTTGTAATTGTATTAAAGGATTTCATCCTAAGAATCATCAAGCTTGGAATTTGAGAGATGGATCTGATGGATGTTTGAGGGATAATGAATTGGATTGTGTGAGTGATAGGTTTTTACATTTGGTGAATGTGAAATTGCCTGAGACAAGTAGTGTTTTTGTGAATAGAAGTATGAGTTTGGTTGAATGTGGTGATTTGTGTATGAAGAATTGTTCTTGTACTGGTTATGCTAATATTGAGATTGTTAATGGTGGAATTGGTTGTGTTATGTGGCTTGATCAACTTATTGATATTAGAGCTTATCCTGCTGGTGGTCAAGATCTTTTTGTCAGATTATCAGCTTCTGATGTAGATGATGAAGTGCCAAGAGAAAGTTCTGATCGCAAGACAGCTAAGGCTATTGGCATTATGGCTGGGGGTGCAGCTGTTATATTTTTGGCAGTAGGAATATGTTTCTTGTGGAGGAAGAAAAAATTGCAGTTtctattgaatttgaaaagaaagTCAGAAAAAAGAGGTTCATTGGAAAAAAGTCAGGATTTGCTTATAACTGAAGGAGTGTTTACAAGTAATAGAGAACAAtcaagtgaaaataaaatggatgaTCTAGAATTGCCATTCTTTGATTTTAATACCATAACTATGGCTACAAATAATTTCtctgaacaaaataaacttGGACAAGGAGGCTTTGGTATTGTTTACAAAGGTAGGTTGATGGAAGGTCAGGAAATTGCGGTAAAGAGATTATCAAAAAATTCTGGCCAAGGTGTTGAAGAATTTAAAAACGAGGTAAAGTTGATTGTCAAACTTCAACATCGAAACCTTGTTCGGCTACTTGGTTGCAGCTTTCAAATGGATGAAAAAGTGCTAGTTTATGAGTACATGGAAAATAGAAGCCTTGATGCCATTTTGTTTGACAAAGCTAAAAGATCCTCGCTAGACTGGCAAACACGCTTCAACATTATATCAGGAATAGCTAGAGGACTTCTTTATCTTCACCAAGATTCTAGATTTAGGATCATCCATAGAGATCTTAAGGCAAGCAACATTCTACTTGACCGAGAAATGAATCCAAAGATTTCAGATTTTGGAATGGCTAGAATTTTTGGCACGGATCAGGAAGAGGCAAATACAGTTAGAGTCGTTGGAACATACGGCTATATGTCTCCTGAATATGCTATGGATGGAATCTTCTCGGTGAAATCTGATGTTTTTAGTTTCGGCGTTCTCGTGATGGAGATCATAAGTGGGAAAAAGAACCGAGGTTTCTATTCCGCAAACAAAGAATTGAATCTTCTCGGTCATaGTTGGAAGCTTTGGAAAGAAGGAAATGCTTTGGAACTGATTGATTCTTCCATTGATAATTCATATTTACCATCTGAGGTTCTTAGATGCATACAAGTTGGGCTATTATGTGTACAAGAGCGAGCAGAAGATAGACCAACAATGTCTTCAGTGGTGTTGATGTTGAGTAGCGAAACAGCAACAATAGCAGAGCCGAAAAATCCTGGATTTTGCCTAGGAAGTAATCCTATTGAAACTGATTCTTCCTCAAGTAAAAAAGATGAATCTTGCACAGTGAACCAAGTTACTGTCACAATGGTAGATGGCAGATAG 2577 0.3426 MKSFSFSTLFLFCFSTSTIFFSTPSISASSSDTLTTTQILKINETLLSPTGIFQLSFFSYDKFSWYLGIRYNIDHDNRTVVWVANRNTPIQNPNSFLKLTDTGLIIIDQSNKTIWATEKINKNSTFNKNPILQILDSGNLVISESPNENDPTKFLWQSFDFPTDTLLPGMKLGWNFDTNRETHINSWKVTDQDPSIGDISFKMDYHGVPEIFLWNKNKRVYRSGPWNGKRFSGVPEMQPLTDSIQFSFVQNEHEVYYTFSIGNESLFSRLSVDSLGELQRLTWIHSRKFWTKFWYAPKDQCDNYKECGPFGICDTNASPVCNCIKGFHPKNHQAWNLRDGSDGCLRDNELDCVSDRFLHLVNVKLPETSSVFVNRSMSLVECGDLCMKNCSCTGYANIEIVNGGIGCVMWLDQLIDIRAYPAGGQDLFVRLSASDVDDEVPRESSDRKTAKAIGIMAGGAAVIFLAVGICFLWRKKKLQFLLNLKRKSEKRGSLEKSQDLLITEGVFTSNREQSSENKMDDLELPFFDFNTITMATNNFSEQNKLGQGGFGIVYKGRLMEGQEIAVKRLSKNSGQGVEEFKNEVKLIVKLQHRNLVRLLGCSFQMDEKVLVYEYMENRSLDAILFDKAKRSSLDWQTRFNIISGIARGLLYLHQDSRFRIIHRDLKASNILLDREMNPKISDFGMARIFGTDQEEANTVRVVGTYGYMSPEYAMDGIFSVKSDVFSFGVLVMEIISGKKNRGFYSANKELNLLGHSWKLWKEGNALELIDSSIDNSYLPSEVLRCIQVGLLCVQERAEDRPTMSSVVLMLSSETATIAEPKNPGFCLGSNPIETDSSSSKKDESCTVNQVTVTMVDGR 858
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01778 858 Pfam D-mannose binding lectin 79 188 IPR001480 -
Tsu02g01778 858 SUPERFAMILY alpha-D-mannose-specific plant lectins 78 227 IPR036426 -
Tsu02g01778 858 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 19 857 - -
Tsu02g01778 858 SUPERFAMILY Protein kinase-like (PK-like) 517 810 IPR011009 -
Tsu02g01778 858 Pfam Protein tyrosine and serine/threonine kinase 542 808 IPR001245 GO:0004672|GO:0006468
Tsu02g01778 858 PIRSF SRK 3 858 IPR024171 GO:0004674
Tsu02g01778 858 Pfam PAN-like domain 352 417 IPR003609 -
Tsu02g01778 858 Gene3D Transferase(Phosphotransferase) domain 1 615 822 - -
Tsu02g01778 858 CDD STKc_IRAK 545 810 - -
Tsu02g01778 858 ProSiteProfiles PAN/Apple domain profile. 352 432 IPR003609 -
Tsu02g01778 858 Pfam S-locus glycoprotein domain 221 331 IPR000858 GO:0048544
Tsu02g01778 858 PANTHER - 19 857 - -
Tsu02g01778 858 CDD B_lectin 37 162 IPR001480 -
Tsu02g01778 858 Gene3D Phosphorylase Kinase; domain 1 512 614 - -
Tsu02g01778 858 Pfam Receptor serine/threonine kinase 495 529 IPR022126 GO:0004674
Tsu02g01778 858 SMART serkin_6 539 808 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01778 858 ProSiteProfiles Protein kinase domain profile. 539 825 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01778 858 CDD PAN_AP_plant 350 432 - -
Tsu02g01778 858 Gene3D - 25 159 IPR036426 -
Tsu02g01778 858 SMART blect_4 37 162 IPR001480 -
Tsu02g01778 858 ProSiteProfiles Bulb-type lectin domain profile. 31 155 IPR001480 -
Tsu02g01778 858 ProSitePatterns Protein kinases ATP-binding region signature. 545 567 IPR017441 GO:0005524
Tsu02g01778 858 Pfam Domain of unknown function (DUF3403) 812 858 IPR021820 GO:0004674
Tsu02g01778 858 SMART ntp_6 352 431 IPR003609 -
Tsu02g01778 858 ProSitePatterns Serine/Threonine protein kinases active-site signature. 660 672 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01778 Tsu-Chr2 15956656 15962170 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01778 527 853 Receptor kinase-like Gene Family AT4G11530 59.036 7.67e-135 416
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Tsu02g01778 PK_Tyr_Ser-Thr 7.9e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01778 - - cam:101504189 1429.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu08g04193 08 60139874 60143346 Tsu02g01778 02 15956656 15962170 PCT