Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01772 ATGGATTCTCATCTCCCCGACCACTTCAAATGTCCAATTTCTCTCGAAATAATGTCTGACCCAGTTATCCTCTCTTCCGGTCACACATTCGATCGTCCTTCAATCCAACGGTGGTTAGATGAAGGTCATAGAACTTGTCCAATTACCAAACTACCCCTCCCTGCTAATCCTACTCTCATCCCTAATCACGCTCTTCGTAGCTTAATCTCTACCTACACTCTCCTTCCACCACTTCACCAAATCATTTCCCAACctgaaaccctaatttcaattttaaaatctccttcttcttcctccgATTCCAAAATTGACTCGCTCCGTCAACTCGCTCGTCTTTCTAAACGCGACGCCAATTTCCGTCGTCGTCTTGTTGATTCCGGTGCTGTCTCCGCCGTTCTTTTCTGTCTTGATTGTTGTTCCTCCGGTGAAACTAAGTTACAGGAGAAAGCTTTGTCTCTTCTTCTTAATCTTAGTCTTGATGATGATAGTAAGATTGGACTTGTTGCTGAAGGTGCAATTGATCGTGTTGTTGCGTTTCTTCTCCGGGAAGGTTCTTCCGATTGTTGCGCACTCGCGGCGACGATAATTACTAGTCTTGCGGTTGTGGAGGTGAATAAGGCGACTATTGGTGCTTTTCCTGGAGCAATTGAAGCTCTGGTGGCGATTCTGAAGGATGGGAAGGGGAGAGAGAGGAAAGAAGCTGCTACTGCGCTTTACGCGCTTTGCTGTTTTCGAGATAATCGGAAAAGGGCGGTGGATTGTGGTGCGGTGCCGATTTTAATGAGGAGTGTTGAATGTGGACTTGAAAGAGGTGTTGAGGTTATTGGTGTTTTGGCTAAGTGTAAGGAAGGTAGGGAAGAGTTGGAAAGTTATGGTGGTTGTGTGAAGATTCTTGTTCATGTGTTGAGGAATGGAAGCTCTAGAGGGATTCAGTATGCATTGTTGGCACTTACTTCGCTTTGTTTTCATAGCAAGGAAATGCTTTTGGTGACTCTGCAAGAAGGGGTTTTGGATACCTGTCTTGGGTtggttgatgatgataatgagaaAGTTAGGAGAAATTCATCCAATTTGATTCGGGTTCTTCGCAGCGGTGGCAATCATTGGATGTATTGA 1116 0.4274 MDSHLPDHFKCPISLEIMSDPVILSSGHTFDRPSIQRWLDEGHRTCPITKLPLPANPTLIPNHALRSLISTYTLLPPLHQIISQPETLISILKSPSSSSDSKIDSLRQLARLSKRDANFRRRLVDSGAVSAVLFCLDCCSSGETKLQEKALSLLLNLSLDDDSKIGLVAEGAIDRVVAFLLREGSSDCCALAATIITSLAVVEVNKATIGAFPGAIEALVAILKDGKGRERKEAATALYALCCFRDNRKRAVDCGAVPILMRSVECGLERGVEVIGVLAKCKEGREELESYGGCVKILVHVLRNGSSRGIQYALLALTSLCFHSKEMLLVTLQEGVLDTCLGLVDDDNEKVRRNSSNLIRVLRSGGNHWMY 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01772 371 ProSiteProfiles U-box domain profile. 4 79 IPR003613 GO:0004842|GO:0016567
Tsu02g01772 371 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 8 1 363 - -
Tsu02g01772 371 Gene3D - 78 269 IPR011989 -
Tsu02g01772 371 Gene3D - 270 363 IPR011989 -
Tsu02g01772 371 PANTHER U BOX DOMAIN-CONTAINING 1 363 - -
Tsu02g01772 371 CDD RING-Ubox_PUB 9 50 IPR045210 -
Tsu02g01772 371 SMART arm_5 116 159 IPR000225 GO:0005515
Tsu02g01772 371 SMART arm_5 281 322 IPR000225 GO:0005515
Tsu02g01772 371 SMART arm_5 160 201 IPR000225 GO:0005515
Tsu02g01772 371 Pfam U-box domain 6 72 IPR003613 GO:0004842|GO:0016567
Tsu02g01772 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 74 IPR013083 -
Tsu02g01772 371 SUPERFAMILY ARM repeat 86 364 IPR016024 -
Tsu02g01772 371 SUPERFAMILY RING/U-box 4 73 - -
Tsu02g01772 371 SMART Ubox_2 8 72 IPR003613 GO:0004842|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01772 Tsu-Chr2 15840408 15841970 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01772 1 362 U-box Gene Family AT4G21350 58.221 1.29e-137 395
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01772 - - gmx:100785141 506.138