Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01770 ATGGAACAAGAAAATAACAATAGATTAAGTGTGTCTATGGAAGATTTGGGTTTTAATACTGGTCACAACAAGGGAAAATTGAGCCAGAAGCATTATGATGATTTTGGTCCAAAAGTGTTCATATCCAAGAACCTTGAGACAGAAAGAAAGAGAAGGGAGAAACTTGGTTCAAGACTTTTGGCTCTTAGGTCTCTAGTACCAATCATCACAAGTatGAACAAAGCAAGCATTATTGAGGATGCTATCACTTATACCAAGAAGTTGCAAAATGAAATTGAGATTCTTACAAATGAGCTTGATGAAATAATGGaagaaacaagaaagaaaaaaggagAGCAAAAAACATGTGAATCTTCTGCTGCTAGGGAAAAGATCAATATACCTTGGATAGagGAAGAAATCCAGGTAGCAAAAATTGATGGGAATAAGTTATGGGTGAAGATGATCATTGAGAATAAGAGAGGAAGGTTCAAGAAATTATTAGAGGATTTGAATAATTCAAATATTGAAATGATTGATGTTAGTGCTACAACTATAAAAGGAGCATATCTTATTACAGCCACCTTAGAGGGTATGAGTGGTGAACCAATTGAGCGTTATCAAATTCCAACTATTATGAAGTTCAAGTAG 630 0.3317 MEQENNNRLSVSMEDLGFNTGHNKGKLSQKHYDDFGPKVFISKNLETERKRREKLGSRLLALRSLVPIITSMNKASIIEDAITYTKKLQNEIEILTNELDEIMEETRKKKGEQKTCESSAAREKINIPWIEEEIQVAKIDGNKLWVKMIIENKRGRFKKLLEDLNNSNIEMIDVSATTIKGAYLITATLEGMSGEPIERYQIPTIMKFK 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01770 209 Pfam Helix-loop-helix DNA-binding domain 46 89 IPR011598 GO:0046983
Tsu02g01770 209 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 39 88 IPR011598 GO:0046983
Tsu02g01770 209 SMART finulus 45 94 IPR011598 GO:0046983
Tsu02g01770 209 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 44 106 IPR036638 GO:0046983
Tsu02g01770 209 PANTHER TRANSCRIPTION FACTOR DYT1 10 203 - -
Tsu02g01770 209 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 10 203 - -
Tsu02g01770 209 Gene3D - 42 121 IPR036638 GO:0046983
Tsu02g01770 209 Coils Coil 78 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01770 Tsu-Chr2 15822779 15824256 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01770 40 190 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G21330 45.570 7.64e-35 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g01770 HLH 4.7e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01770 - - mtr:MTR_4g091910 258.07