Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01716 atggtggagagaagaagaaagcctCTGATTCTGTGTTCAACCAAAAATGTCATCAATTCTGTATTGAAGAAGAATTCTTCAACGAATGAATTCTCTAAATTGCATTTACCGGCTGGAATTCTACGATTCTCCAACAAATTACCTTCTTTTGATCACTCTGCACTCATTGCTCTCTCCACTTCTCTTCTCAAAAGACTTTGCATCACTTCTGGTTCTCCGGTTATGGTCAAGAATGCTGAAATGAACACACAGAGAATTGCAGTGGCTATTGCTCTGGACCCTCCTAGCAGTGACACCACTACCCTTGATATAGATCAATCACCATCCTCTTCTTCTAGAATAATGCTTGTTTTTCCTTCCTGTGATTTCCCTCTAAGTGGCCCCTTGTTAAATGGTGAAATTGCTTATTTGTCTCCTCTTTTGGCCTTTAATCTTAACTTGCACATTTCATGTTTGAAATCTATTATTCACAATGGTCAAGATGCTTTGTCGTCTTATTTCAAACCTCAATGCCAAGTCGGTAATGAAGATGCAGCTAAAAGCATTGAAGATTCTGTCATTAATATAGAGTTGGAGCCTCTCACTGAACCTCCCAGATTTGCCTCCCTTCTGAGGGTTGCTTTTGTGAAGATACCAGAATGTGGCGTCCTTGATTCCATTAAACCAACTTCAGATGTTGAATCCAAAGAACGTCAAGACATGATTGACTTGGCTTTGCAGAAGTACTTTGAAGTCGATAGATATTTGTCAAGTAGAGATATTTTCGGAATTAACATTAGTTGGAATTGTAATTCCACTATTTGCATTCCTTGTAACCACAAAACACCAAAGAAAAGTGACAACTTTATCTGTTTTAAGGTCATTGCTATGGAACCATCAGATGAACCAGTTCTCCGTGTCAATAAAACCTTAACTGCTTTGGTGTTAGTAGGGAGTTCCCCATCTGCCCTTCCTCCGGATTTGCTAATTGCTGGACCAGAAGGGACCATGCCTTTGCAAAGGGACACAGTGAAGACCTTGGCTTCAATACTAGCACCAACTTTATGTCCAACTGCACTTTCTTCCAAGTTTAGAGTTTCAGTACTATTGTACGGCTTGGCAGGTTGTGGGAAAAGGACTGTTGTTAGATATGTTGCTCGACGACTAGGCCTGCATGTGGTGGAATATAACTGTCATGATCTAACGGGCTCCGAGAGAACATCTGTTGCTCTCGCTCAAGTTTTCAAGACTGCTCAAAGATACTCGCCAACAATACTTCTTCTTCGTCATTTTGAGGTTTTCCAAGATTCGCAATCACCTGAGGTTTCACAAAATGATCAAAGAGGCAATACATCTGAAGTTGCATCAGTCATTAGGAAATTCACTGAGCCCGTTGGCGATCATGGTGATAGTAACTCCTTGGTGAAATCAAACGGCGAATTTGTGGAGAAGACTTCTGAAAAGACGAGTGGGCACCAGGTCCTGTTGATTGCGGCTGCTGACAGTTCAGAGGGTCTACCTTCAACTATCAGACGCTGCTTTAGCCATGAAATAAGCATGGGGCCTTTAACAGAAGAGCAAAGGGCTGAAATGCTATTGCATTCACTTCAAAATGTTTATGGACTCCACTCTAATACTGATTTAGAAGGTTTTGTAAAAGAAATAGTTGGACAGACATCTGGTTTCATGCCCAGGGATATGTGTGCTTTAATTGCAGATGCTGGTGCCAGCTTATTTCCCAGGAGCAATGCCGAAGTAGACAAAGATGAACCTGAAGATACAGATAGTTCTCTTAGTTCCAAGGTGACGGAGGACAACAGCCAGTCAAAAGTTTCAGCTTTGAAACCTGGGAAAGAAGACTTGGTGAATGCTTTGGAACGATCCAAGAAAAGAAATGCATCAGCATTGGGTACTCCAAAGGTTCCAAATGTAAAATGGGAAGATGTTGGTGGGCTTGAAGATGTCAAAAAATCAATCCTGGATACTGTTCAGTTACCTCTCTTGCATAAAGATCTGTTTGCATCTGGATTACGCAAGCGGTCTGGTGTTCTTTTGTATGGTCCCCCTGGAACTGGCAAAACTTTATTAGCAAAAGCTGTTGCTACGGAATGCTCGTTAAATTTTCTTAGTGTGAAAGGTCCTGAACTGATCAACATGTACATAGGAGAGTCTGAGAAGAATGTTCGAGACATTTTTCAGAAGGCCAGATCAGCACGTCCATGTGTCATATTTTTTGATGAGCTTGATTCTCTTGCACCAGCTCGGGGAGCTTCCGGAGATTCTGGAGGTGTTATGGACAGAGTTGTTTCACAGATGCTTGCAGAAATTGATGGCTTAAGTGATTCAAcacagGATCTATTTATTATAGGTGCTAGTAATAGACCAGATTTGATAGATCCGGCACTTCTTCGCCCTGGTCGTTTTGATAAATTGTTATATGTTGGAGTTAACTCCGATGCATCATACAGAGAGAGGGTACTGAAAGCTCTAACGAGGAAGTTCAAATTGCATGAAGATGTTTCACTTTACGCCATTGCAAAAAAGTGTCCACCAAACTTCACTGGCGCAGACATGTATGCCCTGTGTGCAGATGCTTGGTTCCTCGCGGCAAAGCGCAGGGTTTTGAATGCAGATCCAGAGTCCTCAAACCCAGATAATGAAGCAGATTCTATTGTTGTTGAATACGATGATTTTGTCCAGGTCTTAGAAGAGCTTCAGCCTTCCCTCTCCACAGCTGAGCTTAAGAAGTACGAGCTTCTTAGAGATCAGTTTGAAGGCACCTCTAAATGA 2769 0.4142 MVERRRKPLILCSTKNVINSVLKKNSSTNEFSKLHLPAGILRFSNKLPSFDHSALIALSTSLLKRLCITSGSPVMVKNAEMNTQRIAVAIALDPPSSDTTTLDIDQSPSSSSRIMLVFPSCDFPLSGPLLNGEIAYLSPLLAFNLNLHISCLKSIIHNGQDALSSYFKPQCQVGNEDAAKSIEDSVINIELEPLTEPPRFASLLRVAFVKIPECGVLDSIKPTSDVESKERQDMIDLALQKYFEVDRYLSSRDIFGINISWNCNSTICIPCNHKTPKKSDNFICFKVIAMEPSDEPVLRVNKTLTALVLVGSSPSALPPDLLIAGPEGTMPLQRDTVKTLASILAPTLCPTALSSKFRVSVLLYGLAGCGKRTVVRYVARRLGLHVVEYNCHDLTGSERTSVALAQVFKTAQRYSPTILLLRHFEVFQDSQSPEVSQNDQRGNTSEVASVIRKFTEPVGDHGDSNSLVKSNGEFVEKTSEKTSGHQVLLIAAADSSEGLPSTIRRCFSHEISMGPLTEEQRAEMLLHSLQNVYGLHSNTDLEGFVKEIVGQTSGFMPRDMCALIADAGASLFPRSNAEVDKDEPEDTDSSLSSKVTEDNSQSKVSALKPGKEDLVNALERSKKRNASALGTPKVPNVKWEDVGGLEDVKKSILDTVQLPLLHKDLFASGLRKRSGVLLYGPPGTGKTLLAKAVATECSLNFLSVKGPELINMYIGESEKNVRDIFQKARSARPCVIFFDELDSLAPARGASGDSGGVMDRVVSQMLAEIDGLSDSTQDLFIIGASNRPDLIDPALLRPGRFDKLLYVGVNSDASYRERVLKALTRKFKLHEDVSLYAIAKKCPPNFTGADMYALCADAWFLAAKRRVLNADPESSNPDNEADSIVVEYDDFVQVLEELQPSLSTAELKKYELLRDQFEGTSK 922
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01716 922 CDD AAA 660 808 - -
Tsu02g01716 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 635 916 IPR027417 -
Tsu02g01716 922 Gene3D - 329 535 IPR027417 -
Tsu02g01716 922 Pfam ATPase family associated with various cellular activities (AAA) 676 808 IPR003959 GO:0005524|GO:0016887
Tsu02g01716 922 Pfam ATPase family associated with various cellular activities (AAA) 361 512 IPR003959 GO:0005524|GO:0016887
Tsu02g01716 922 PANTHER AAA-FAMILY ATPASE 18 918 - -
Tsu02g01716 922 PANTHER PEROXISOME ASSEMBLY FACTOR 2 18 918 - -
Tsu02g01716 922 SMART AAA_5 357 517 IPR003593 -
Tsu02g01716 922 SMART AAA_5 672 812 IPR003593 -
Tsu02g01716 922 MobiDBLite consensus disorder prediction 576 592 - -
Tsu02g01716 922 Gene3D - 634 911 IPR027417 -
Tsu02g01716 922 Gene3D - 810 896 - -
Tsu02g01716 922 CDD AAA 352 421 - -
Tsu02g01716 922 ProSitePatterns AAA-protein family signature. 779 797 IPR003960 GO:0005524|GO:0016887
Tsu02g01716 922 MobiDBLite consensus disorder prediction 575 611 - -
Tsu02g01716 922 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 330 582 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01716 Tsu-Chr2 15077071 15084408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01716 642 881 Calmodulin-binding Proteins AT3G56690 39.344 1.53e-41 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01716 K13339 - gmx:100820183 1458.35