Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01714 ATGAGCATTAACAAAATACTTAAATCTTGTACATTTGTTTATGAaTTTCTTATGGAGAATATTTCATTCATCAGAGGGTTTCCTGATCAGGAAATAATGGAGGATCCTTCTTTAAGTCTTCATCAATGGCATTTGAACTCTATTGATGAGTCTAACTCACTGCCAATAGCTGCTGCTTTTGGAGATACTTTACAACATCATTCACATATTTATCCAAACTTTAATCACAGAACTTCAGTTGAAACTGCTCCGAAACTAGATACTCAATTTGTTTCGTACCCGAATCTTGTTTCATTTGTCGATTTGAATCAAGTAAATCAGTTTGGATTAATGAAGCCTAAGGATGAGATGGTTTGTCCTCAAAACAACAGGATAGCTCCTTCTGATATGATATCGCAAGGAACCTTTGAGGCCAAAAAGTTAGCGACACGTCCTAAACTCTCTCTACCTCAAGAACACATAATAGCTGAAAGAAAGCGGCGTGAAAAACTCAGCCAGCGCTTCATTGCTCTATCTGCACTTGTTCCCGGCCTACAAAAGATGGACAAAGCTACTGTTCTTGGAGATGCTATCAAGTACTTGAAGAAATTGCAAGAGAAGGTGAGGGATCTCGAGGAGGAACAAAACATGAAGAAAAACGTGGAAACTGTGGTGGTTGTGAAGAAATCTCAATTACGCAGTGATGTTGAAAACTCTTCTGCAGAATCTGGCAGTCCCTTTGACGAGGAGCTGCCAGAAATTGAAGCAAGATTTTGTGATAGAAATGTCCTCATAAGAATTCACTGTGAGAAAACCAATGGAGTTGTGGAAAAAACAATCCATGAAATTGAGAAACTTCATCTAAAAGTCACCAATAGCAGTGTCATGACATTTGGAAACTGTGCACTCGATATAACAATTATGGCTCAGATGGATACAGAATTTGACATGACAGTGAAGGATCTTGTCAGAAACCTACGCTCGGCTTTTGCATCTTTCATCTGA 984 0.3862 MSINKILKSCTFVYEFLMENISFIRGFPDQEIMEDPSLSLHQWHLNSIDESNSLPIAAAFGDTLQHHSHIYPNFNHRTSVETAPKLDTQFVSYPNLVSFVDLNQVNQFGLMKPKDEMVCPQNNRIAPSDMISQGTFEAKKLATRPKLSLPQEHIIAERKRREKLSQRFIALSALVPGLQKMDKATVLGDAIKYLKKLQEKVRDLEEEQNMKKNVETVVVVKKSQLRSDVENSSAESGSPFDEELPEIEARFCDRNVLIRIHCEKTNGVVEKTIHEIEKLHLKVTNSSVMTFGNCALDITIMAQMDTEFDMTVKDLVRNLRSAFASFI 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01714 327 SMART finulus 154 203 IPR011598 GO:0046983
Tsu02g01714 327 Pfam Helix-loop-helix DNA-binding domain 151 198 IPR011598 GO:0046983
Tsu02g01714 327 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 20 83 - -
Tsu02g01714 327 CDD bHLH_AtNAI1_like 148 222 - -
Tsu02g01714 327 Gene3D - 150 222 IPR036638 GO:0046983
Tsu02g01714 327 PANTHER BHLH TRANSCRIPTION FACTOR 20 83 - -
Tsu02g01714 327 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 212 IPR036638 GO:0046983
Tsu02g01714 327 PANTHER SYMBIOTIC AMMONIUM TRANSPORTER 87 326 - -
Tsu02g01714 327 Coils Coil 187 217 - -
Tsu02g01714 327 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 148 197 IPR011598 GO:0046983
Tsu02g01714 327 PANTHER BHLH TRANSCRIPTION FACTOR 87 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01714 Tsu-Chr2 15068896 15070835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01714 151 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 59.116 8.29e-62 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g01714 HLH 6.6e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01714 - - vun:114179595 381.333
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01714 02 15068896 15070835 Tsu02g01714 02 15068896 15070835 ECH
Tsu02g01714 02 15068896 15070835 Tsu08g04244 08 60457370 60459906 PCT