Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01684 ATGGGGAGAGGAAAGATTGTGATTAGAAGGATTGAGAATTTGACTAGCCGGCAAGTAACTTTTTCAAAGAGAAGAAAAGGATTGATGAAGAAAGCTAAAGAACTATCCATTCTTTGTGATGCACAAGTTGGATTAATTTTGTTCTCTTCCACTCACAAGCTTTATGACTATGCAAGCTCAAGCATGGAATCTGTTATCGAGCGTTATAACAAGTTAACGGAGGACCGCCATCAAGCAGTGGATCCTATTTTGGATGTCAAGTTTTGGCAAAGAGAAGCAGCAAGCTTGAGGCAACAATTGCAGCAATTGAATGATAGCCAAAGGCAATTGATGGGCCAAGAACTATCTAGTTTGGATTTTGATGAGCTGAGGCATCTAGAACACCAATTGGAGATGAGTTTGAAAAGCATTCGCATGAGAAAGGGTCAAATTTTTAGCGATGAGATCAATGAATTACACAAAAAGAGAAGCCTCAGTAgtaaagaaaatgaagaaattcaTAAGAAGATAGAGCAAATTGGTGAGGAAAATGCAGAACTAGAGAAGGTTATTGGTGCAAGAAGGGAATATGCGACAACCAATCCTTCATGCAGTACTAGGATCAGCTATGGATATGATGAACCAATCAGTCTCCAGCTAAGGCAGCCACAACCCCAACAGTGA 663 0.3906 MGRGKIVIRRIENLTSRQVTFSKRRKGLMKKAKELSILCDAQVGLILFSSTHKLYDYASSSMESVIERYNKLTEDRHQAVDPILDVKFWQREAASLRQQLQQLNDSQRQLMGQELSSLDFDELRHLEHQLEMSLKSIRMRKGQIFSDEINELHKKRSLSSKENEEIHKKIEQIGEENAELEKVIGARREYATTNPSCSTRISYGYDEPISLQLRQPQPQQ 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01684 220 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu02g01684 220 Gene3D - 14 92 IPR036879 GO:0003677|GO:0046983
Tsu02g01684 220 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu02g01684 220 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Tsu02g01684 220 Coils Coil 163 183 - -
Tsu02g01684 220 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 219 - -
Tsu02g01684 220 PANTHER MADS-BOX TRANSCRIPTION FACTOR 1 219 - -
Tsu02g01684 220 Coils Coil 86 113 - -
Tsu02g01684 220 SUPERFAMILY SRF-like 2 75 IPR036879 GO:0003677|GO:0046983
Tsu02g01684 220 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu02g01684 220 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu02g01684 220 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu02g01684 220 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu02g01684 220 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu02g01684 220 Pfam K-box region 85 171 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu02g01684 220 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01684 Tsu-Chr2 14842251 14849177 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01684 1 220 MADS-box Gene Family AT2G22630 50.673 1.79e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu02g01684 K-box 7.7e-25 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01684 K09264 - rcu:8279200 261.922