Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01666 ATGAGTACAAGGGAGGCAACTTCTTTGCAATTTGCAAAGTGTCCACCGATTTTAGAAGAGCGTGACGCTTTAACCTCTACTGATGGTGCGACCGATTCACTTACTGCTGGATTGCTGGTAGGCTTGAATGTGGAAGAATCCGCACCTGATACTTACCAGTCTCCTCCTGCACCTCTGCCTTATGATTTAGTCTTGGGAGGTACAGCGTCGACAGACTCTGAGACAGGCAAAGACACTGTTGTTAGTGGTAGTAGTGTTGAAACTTCAATTACAGTAGATATTGAAGAATCTGACCCTAAAGTTCAAGTTAAATCTGCACCGATATCTCCAAGCAAGGCAGAACTGTGGAAATCAAATGAACCTCTGGCATTTGTGTTAGAAGAAGAGGACGGCTGTCCAATTTGCCTTGAAGaatatgatgatgagaatcctAAAACTGTTACAAAATGTGAACACCACTTTCACCTAGCTTGCATACTTGAGTGGATAGAAAGAAGTGACTCTTGTCCTATATGTGATCAGCTCGTCTTCAACCTCAAACTCAAACATTTTCACAAAACCCTTCATCTTCAACTTCGTTCAACCTCAAGTTCGTTCAACCTTCATAATCCAGCTTCTGCTCCTTCAATCAAGCTTCAAATTCGTTTTTTCGCTGAGATTCGTTCAAATATTCACAGCTTCTGCTTCAGATTCATCCTTCAGCTTTGTTCAACCATCAAATCCAGTGGAATGAGTGACAAGGCCATGACAATGATATTAGAACTCTTACAAGATGCATTCGAACATGCAAAGATTCCAAGTGCTGTGTACTTGGATCCATGGCATGCTGATATATTTGAATTGACAATAAGTCATGGTAAGTCTCCTACACAAGTCGGCGAACATCCTGCATCAACCAACAATTTAAAGCAAAAGAAGCAAAAGGTTTCTGAAGTGAAGGCTGGAATTGATGAAGCAGAAGCTCTGATTAGAAAAACGGACCTTGAGGAAAGAAGTTTGCAGCCAAATATCAAGGGTGTACTTCTTGCTAAGTTGCGGGAGTATAAATCAGATCTAAACaaccttaaaagtgaaattaagaaaattgtaGCTGGTAACTTGAATCCTTCTGCACGGGATGAATTGTTGGAATCTGGCATGGCAGATGCTATGACAGTGTTCCACCATTTTGGGCAGAATCTGAAAATGGGATATGGAGAAGCACCAGATACACCTCTTGATAATGCAGACCATCCAGAGAAATATGATATTGAAGGAATAACTGGAAAAGAATCCAAAGTTATTGAAATGGATTTGATGCTTGGTGTTGTTGATCTTCATACACCTGAGACTGTGGCTGCTGCAGAATCGGTATTTCCGATTGTGTGGATTATTTTTTATGGAGCCAAGCAGCAGCTAAAGAACAGAAAGCTCATCCATAATGGACTATTTCAATGCTTACAGCTCAGGAGTCATAACACCAAACATGGGGATCTCACATTGAATGCATATGAAGAGGATTGTGAATTTGCGGATCCTGCCGGCTCTTTCAAAGGGCTTCAGCATTTCAAAAGAAACTGTACTAATTTTGGATCCCTTTTGGAGAAGTCAAATATGAATCTTACGAAGTGGGAAGATTTTGAGAGTTTATGCTTTAGTAACTTCCAAGTTGGCAAACATCTGGTGAAAATCTTTCTTACCAAACATGATTCCTGCATACAGAAACATGGACTCGTACCTATTTCCCAGAAGCCAAACACCACACCTTCATTATTCTCATCCTTCCATGGAACCTGTTCCTCCTCAAATGAAGAAATCACCCTTTCCTTATGA 1812 0.3996 MSTREATSLQFAKCPPILEERDALTSTDGATDSLTAGLLVGLNVEESAPDTYQSPPAPLPYDLVLGGTASTDSETGKDTVVSGSSVETSITVDIEESDPKVQVKSAPISPSKAELWKSNEPLAFVLEEEDGCPICLEEYDDENPKTVTKCEHHFHLACILEWIERSDSCPICDQLVFNLKLKHFHKTLHLQLRSTSSSFNLHNPASAPSIKLQIRFFAEIRSNIHSFCFRFILQLCSTIKSSGMSDKAMTMILELLQDAFEHAKIPSAVYLDPWHADIFELTISHGKSPTQVGEHPASTNNLKQKKQKVSEVKAGIDEAEALIRKTDLEERSLQPNIKGVLLAKLREYKSDLNNLKSEIKKIVAGNLNPSARDELLESGMADAMTVFHHFGQNLKMGYGEAPDTPLDNADHPEKYDIEGITGKESKVIEMDLMLGVVDLHTPETVAAAESVFPIVWIIFYGAKQQLKNRKLIHNGLFQCLQLRSHNTKHGDLTLNAYEEDCEFADPAGSFKGLQHFKRNCTNFGSLLEKSNMNLTKWEDFESLCFSNFQVGKHLVKIFLTKHDSCIQKHGLVPISQKPNTTPSLFSSFHGTCSSSNEEITLSL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01666 603 Gene3D - 277 366 IPR038407 -
Tsu02g01666 603 Coils Coil 338 365 - -
Tsu02g01666 603 Pfam Ring finger domain 132 172 IPR001841 -
Tsu02g01666 603 PANTHER ZINC FINGER, RING/FYVE/PHD-TYPE 13 179 - -
Tsu02g01666 603 Pfam Vesicle transport v-SNARE protein N-terminus 298 361 IPR007705 GO:0006886|GO:0016020
Tsu02g01666 603 SUPERFAMILY t-snare proteins 296 363 IPR010989 GO:0016020|GO:0016192
Tsu02g01666 603 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RHB1A-RELATED 13 179 - -
Tsu02g01666 603 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 179 IPR013083 -
Tsu02g01666 603 SUPERFAMILY RING/U-box 125 178 - -
Tsu02g01666 603 SMART ring_2 132 172 IPR001841 -
Tsu02g01666 603 Coils Coil 302 322 - -
Tsu02g01666 603 ProSiteProfiles Zinc finger RING-type profile. 132 173 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01666 Tsu-Chr2 14664000 14672271 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01666 11 181 C3H Transcription Factor Family AT4G00335 50.289 6.85e-44 153
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01666 - - cam:101501651 261.536