Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01659 ATGTCGCAACTTTCCATTCAACGAGCAAGGAAGTTGAAGTTTTTGATGCCTCAGATCTCTGCTTTGGGAAGTTACCATTTCTCAACAGCGGCTCAATCATCTTCCACTAAACCCAATGCTCCGAGGGTTCCAAATCTTATTGGGGGAAGGTTTCTTGAGTCAAAATCATCATCTTTCATCGATGTTATAAACCCAGCAACACAAGAAGTTGTTTCACAAGTTCCATTGACTACAGATGAAGAGTTCAAAGCTGCAGTAACTGCAGCAAAGAAGGCTTTTCCATCATGGCGTAACACTCCAGTTACGACACGCCAGCGTGTTATGTTGAAATTCCAGGAGCTCATACGCAGAGATATGGATAAACTTGCTTTTAATGTGACAACCGAACAAGGAAAGACTCTGAAGGATGCACAAGGAGATGTATTTCGTGGTTTAGAGGTGGTTGAACATGCTTGTGGGATGGGAACTCTACAAATGGGAGAGTATGTTTCGAATGTATCACATGGAGTCGACACATACAGCGTTAGAGAACCAATTGGTGTTTGTGCTGGTATTTGCCCTTTCAATTTTCCTGCAATGATTCCCTTGTGGATGTTCCCTGTGGCTGTTACTTGTGGCAATACCTTTGTTTTAAAACCATCGGAGAAAGACCCAGGTGCTTCTTTAATGCTTGCAGAATTGGCATTGGAGGCTGGTTTGCCCGAGGGTGTCTTAAATGTGGTTCATGGAACCCATGATATTGTGAATGCCATTTGTGATGATGACGATATCAAAGCCATATCAtttgttggttctaatgttGCTGGAATGCACATATATTCAAGAGCAGCAGCTAAAGGGAAACGTGTTCAGTCTAATATGGGGGCCAAAAATCATGCAATTGTCATGCCAGATGCAAATGTCGATGCTACTGTAAATGCTTTAATTGCTGCTGGTTTTGGAGCTGCTGGACAGAGGTGCATGGCTCTCAGCACAGTTGTTTTTGTGGGAGGCTCACAACAATGGGAATCTAAAATCGTAGAACGTGCCAAAGCTCTTAAAGTAAATGCAGGAACTGAACCTGATACAGATCTTGGTCCGGTTATCAGCAAACAGGCAAAGGAGCGAGTGAAAACATTAGTTCAATCTGGGGTTGAAAGTGGTGCCAAACTACTTATTGATGGAAGAAATATAGTGGTCCCAGGATATGAATCTGGCAATTTTGTCGGGCCAACCATCTTATCAAATATCAGTACTGATATGGAGTGCTACAAGGAGGAAATTTTTGGCCCAGTTCTTCTTTTCATGGAGGCTGATAGCTTGGAAGAGGCTATAGAcattatcaacaaaaacaaGTATGGAAACGGTGCTTCTATATTTACTACTTCTGGCGTTGCTGCAAGGAAATTTCAGACCGAGATTGAGGCAGGGCagGTTGGTATCAATGTTCCTATTCCAGTTCCTTTGCCATTTTTCTCATTTACTGGCAACAAGGCCTCATTTGCCGGCGATCTCAATTTCTACGGCAAGGCAGGGGTTAACTTTTTTACACAGATCAAAACAATAACTCAACAGTGGAAGGAATCGGTAGGCGGTAGCAAGGTTAACTTGGCAATGCCAACCTCTCAAAAATCTTGA 1617 0.4212 MSQLSIQRARKLKFLMPQISALGSYHFSTAAQSSSTKPNAPRVPNLIGGRFLESKSSSFIDVINPATQEVVSQVPLTTDEEFKAAVTAAKKAFPSWRNTPVTTRQRVMLKFQELIRRDMDKLAFNVTTEQGKTLKDAQGDVFRGLEVVEHACGMGTLQMGEYVSNVSHGVDTYSVREPIGVCAGICPFNFPAMIPLWMFPVAVTCGNTFVLKPSEKDPGASLMLAELALEAGLPEGVLNVVHGTHDIVNAICDDDDIKAISFVGSNVAGMHIYSRAAAKGKRVQSNMGAKNHAIVMPDANVDATVNALIAAGFGAAGQRCMALSTVVFVGGSQQWESKIVERAKALKVNAGTEPDTDLGPVISKQAKERVKTLVQSGVESGAKLLIDGRNIVVPGYESGNFVGPTILSNISTDMECYKEEIFGPVLLFMEADSLEEAIDIINKNKYGNGASIFTTSGVAARKFQTEIEAGQVGINVPIPVPLPFFSFTGNKASFAGDLNFYGKAGVNFFTQIKTITQQWKESVGGSKVNLAMPTSQKS 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01659 538 TIGRFAM MMSDH: methylmalonate-semialdehyde dehydrogenase (acylating) 45 519 IPR010061 GO:0004491
Tsu02g01659 538 PANTHER METHYLMALONATE-SEMIALDEHYDE DEHYDROGENASE 32 538 - -
Tsu02g01659 538 ProSitePatterns Aldehyde dehydrogenases cysteine active site. 313 324 IPR016160 GO:0016491
Tsu02g01659 538 Pfam Aldehyde dehydrogenase family 53 515 IPR015590 GO:0016491
Tsu02g01659 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 62 496 IPR016162 GO:0016491
Tsu02g01659 538 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 288 488 IPR016163 GO:0016620
Tsu02g01659 538 PANTHER MALONATE-SEMIALDEHYDE DEHYDROGENASE 32 538 IPR010061 GO:0004491
Tsu02g01659 538 SUPERFAMILY ALDH-like 38 520 IPR016161 GO:0016491
Tsu02g01659 538 CDD ALDH_F6_MMSDH 43 519 IPR010061 GO:0004491
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01659 Tsu-Chr2 14603151 14608433 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01659 12 503 Aldehyde Dehydrogenase Gene Family AT2G14170 80.081 0.0 828
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01659 K00140 - gmx:100791508 950.658