Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01658 ATGGCTTCTTCATTGTTTCTCATATTAATGCCTTTCAAATTCCTTCATCATGTAGCATGGCCTTTTCTTGCTCTGGTGTATCCTATGTGTGCTTCTGTACAAGCAATCGAGACTGATTCCTATGAAGAAACTAAGCATTTGATCTCATATTGGATACTTCTTTCATTAATTTACCTCTTTGACTATGCTTTTATGAGTTTTCTTCCATGGTTTCAACTTTGGATGTACATTAAGCTAATGTTCATCTTCTGGCTCATCATACCGGACTTTGGACGAGCTTCTTATGTTTATAATAACCTTATTCACTCCATGAAACTGAAAATAGACACATGGAGGAAGTGTTTTGTTGAGAAAGAGAACTTTTTAATACTTGCGGAGAGATATATCAAAGAGAATGGAACCGAAGCCTTAGAGAAACTCATTGCTAGCAAGAACACAATGTGTAGGCCTGATGCAGAAGTGACAAATGAAATCATAGTTAccaataataaagaaatgctaAAGGCAAATGGAGAAACACTCCAAATTGAGCACaaagatataaaaaatttggaggccatagagaaaaaagaaattccTGTTACCAATCAAGATATTCCTGCCATGCCTAAAATTGAGCCAAGTCAAAATGCATCATCAGCAACGGTGGAAACCAAAGGAACAACAGAGAGTGACAGAACTGGTGGAGAGTTTCCTCCAAGTTCTACTTCCACACAGAAGGAAGTGCAGAAAGAGTGGACTTGTGCTTTATGTTTGTTAACAATTACATGCGAGAAAATCATGACTATGCACCTTAATGGGAAGAGACACAGGGCTGCTCTGCAGAAGCAAAAGAATGCAGAAGTGACAAATAAACCCATAGCTAATGATAATAAGGAAATACGAAAGACAAATGGAGAAAGACTCCAAATTgagcaaaaaaatataaaatacttgGAGGCTATAGAGAAACAAGAAATTCTTGTTACCAAGCAAAAAATGTGTATTCCTGTCAAGCCTATAATTGGGGCTAGTCCAAATGCATCATCTGCCACAGTTGAAACTAGAGGAACAGTAAAGTGTGACACTGTTGGTGGAGAAGTTCCTCAGAGTTTTACTTCAACACAGAAGGAAGTGCAGAAAGAATGGACATGTGCTTTATGTTTGTTAACAGTTGCATGCGAGAAAGACTTGAATTCCCACCTTAATGGGAGGAAACACAGGGCTGCTTGTGAAGCAGCTTTGAAAGCAAAGAAGCAACCTGCTCCGAAGAAGCTGCAAATCTATCAGCCCAAAGTGGAGGTGAAACAGAAGGATTCTAGCAATATGTTAAATTCTAATGTCAAGAATGGAGATGGTATTGTTAACAAAGGGTTGAAGGGAACAGTACTGATGGATCATAAGGTGCAAAAACCGcagaatttcaattttcatatcGTAAGACCAACACCTTCTACACAAGCTGTCAGGGGACCAACACCTTTCGGACAACCAATATCATCTCCAACAGGTGGACGATCAATGTCATCTCCAACAGTAGTTCCATTTCCATATCATAGTGGAGCTACACCTTTCATAGGACCAACACCATCTCCAATAAGCATTCCATTTCCATATTATGGACCAGAGGGATCGTGGTCGCATCAACCAGAGTTCACCTATTTTATTCCAACTCCTAGGTTGACATATCAGGATCCAATGCGTCGTTGA 1689 0.3754 MASSLFLILMPFKFLHHVAWPFLALVYPMCASVQAIETDSYEETKHLISYWILLSLIYLFDYAFMSFLPWFQLWMYIKLMFIFWLIIPDFGRASYVYNNLIHSMKLKIDTWRKCFVEKENFLILAERYIKENGTEALEKLIASKNTMCRPDAEVTNEIIVTNNKEMLKANGETLQIEHKDIKNLEAIEKKEIPVTNQDIPAMPKIEPSQNASSATVETKGTTESDRTGGEFPPSSTSTQKEVQKEWTCALCLLTITCEKIMTMHLNGKRHRAALQKQKNAEVTNKPIANDNKEIRKTNGERLQIEQKNIKYLEAIEKQEILVTKQKMCIPVKPIIGASPNASSATVETRGTVKCDTVGGEVPQSFTSTQKEVQKEWTCALCLLTVACEKDLNSHLNGRKHRAACEAALKAKKQPAPKKLQIYQPKVEVKQKDSSNMLNSNVKNGDGIVNKGLKGTVLMDHKVQKPQNFNFHIVRPTPSTQAVRGPTPFGQPISSPTGGRSMSSPTVVPFPYHSGATPFIGPTPSPISIPFPYYGPEGSWSHQPEFTYFIPTPRLTYQDPMRR 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01658 562 Pfam Zinc-finger of C2H2 type 376 400 - -
Tsu02g01658 562 Pfam Zinc-finger of C2H2 type 246 270 - -
Tsu02g01658 562 SUPERFAMILY beta-beta-alpha zinc fingers 230 278 IPR036236 -
Tsu02g01658 562 PANTHER HVA22-LIKE PROTEINS 1 277 IPR004345 -
Tsu02g01658 562 PANTHER HVA22-LIKE PROTEINS 279 431 IPR004345 -
Tsu02g01658 562 Pfam TB2/DP1, HVA22 family 28 103 IPR004345 -
Tsu02g01658 562 MobiDBLite consensus disorder prediction 202 239 - -
Tsu02g01658 562 MobiDBLite consensus disorder prediction 199 239 - -
Tsu02g01658 562 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 277 - -
Tsu02g01658 562 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 279 431 - -
Tsu02g01658 562 SUPERFAMILY beta-beta-alpha zinc fingers 356 408 IPR036236 -
Tsu02g01658 562 Gene3D Classic Zinc Finger 230 279 - -
Tsu02g01658 562 Gene3D Classic Zinc Finger 360 406 - -
Tsu02g01658 562 SMART ZnF_U1_5 373 407 IPR003604 GO:0003676|GO:0008270
Tsu02g01658 562 SMART ZnF_U1_5 243 277 IPR003604 GO:0003676|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01658 Tsu-Chr2 14589800 14602852 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01658 245 464 C2H2 Transcription Factor Family AT2G19380 23.984 3.63e-07 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01658 - - mtr:MTR_4g093510 598.201
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01658 02 14589800 14602852 Tsu02g01658 02 14589800 14602852 ECH