Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01656 ATGACTTCTTCCTGGTTTCTCAAACTGCTTTCCAAATGCCTTCATCACTTCTCATGGTATTCATTTCTGTGTGCTTCCGTACAAGCAATTGAGACTGATTCCTATGAAAAAACTAAGCATTTGATCTCATATTGGATACTTCTTTCACTAATTTACCTCTTTGAGTATGCTTTTATGAACCTTCTTCTATGGTTTCACCTTTGGCCGTACATTAAGCTAATGATCGTCTTCTGGCTTATCATACCTGACTTTGGACGAGCTTCTCATGTTTATAATAACCTTATTTGCTCCATGAAACCGCTGTTAGTCATATGCTGGAGGAAGTGTTTTGTTGAGAAAGATAACTTTTTAATGCATGCAGAGAGATATATGAAAGAGAATGGAACTGAGGCCTTAGAGAACCTCATTGCTAGCAAGACAAATGGGGAAAGATTTCAAACAGAACACAAAGACATCAAAGATTCCGAGGCTattgagaaaaaagaaattcCTGCAACCAAGAAAATAACCTATGCTAATATTCAGACAAGTCAAAAGGTATCATCAGCCATAGATGAAACCAAAGGAATATTGGGGAGAGATCCAACTGGTGGAGAGATTACTCAGAGTCATACACAGAAGGAAGTTCAGAAAGAATGGACTTGTGCTTTGTGTTTGGTAAAAACATCGAGCGAGATAACCTTGATTTCCCACCTCAATGGGAGGAAACACAGGGAAGCTTGTGAAGCAGCAGCTTTGAAAGCAAAGAAGCAACCTGCTACGCAGAAGAATGTCCTGCCAGAACCGTTTAGGATGATTAATTCCAGATTAATATGTAAAGTTTGTAATGTTATGCTTTCAGGTGAGGAGTACATGGCCTCTCACATAATAGGGGCGAAACACTTGTCTAATATGAAAAGAAGTTGA 906 0.383 MTSSWFLKLLSKCLHHFSWYSFLCASVQAIETDSYEKTKHLISYWILLSLIYLFEYAFMNLLLWFHLWPYIKLMIVFWLIIPDFGRASHVYNNLICSMKPLLVICWRKCFVEKDNFLMHAERYMKENGTEALENLIASKTNGERFQTEHKDIKDSEAIEKKEIPATKKITYANIQTSQKVSSAIDETKGILGRDPTGGEITQSHTQKEVQKEWTCALCLVKTSSEITLISHLNGRKHREACEAAALKAKKQPATQKNVLPEPFRMINSRLICKVCNVMLSGEEYMASHIIGAKHLSNMKRS 301
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01656 301 PANTHER HVA22-LIKE PROTEINS 1 256 IPR004345 -
Tsu02g01656 301 SUPERFAMILY beta-beta-alpha zinc fingers 259 300 IPR036236 -
Tsu02g01656 301 Pfam Zinc-finger of C2H2 type 213 237 - -
Tsu02g01656 301 Pfam Zinc-finger of C2H2 type 271 294 - -
Tsu02g01656 301 Gene3D Classic Zinc Finger 199 243 - -
Tsu02g01656 301 Gene3D Classic Zinc Finger 246 301 - -
Tsu02g01656 301 SMART ZnF_U1_5 267 301 IPR003604 GO:0003676|GO:0008270
Tsu02g01656 301 SMART ZnF_U1_5 210 244 IPR003604 GO:0003676|GO:0008270
Tsu02g01656 301 Pfam TB2/DP1, HVA22 family 24 96 IPR004345 -
Tsu02g01656 301 SMART c2h2final6 213 237 IPR013087 -
Tsu02g01656 301 SMART c2h2final6 270 294 IPR013087 -
Tsu02g01656 301 PANTHER TB2/DP1, HVA22 FAMILY PROTEIN 1 256 - -
Tsu02g01656 301 SUPERFAMILY beta-beta-alpha zinc fingers 201 246 IPR036236 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01656 Tsu-Chr2 14574515 14576264 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01656 213 299 C2H2 Transcription Factor Family AT2G19380 31.000 5.51e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01656 - - mtr:MTR_4g093270 340.887
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01656 02 14574515 14576264 Tsu02g01656 02 14574515 14576264 ECH