Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01651 ATGGTGAATTCATCTCAAAACGGGTCAATGCTGCACTCTGTGGTTTCTGATGAAGCTGAACATGAACAACCTTCACTATCTCGTGTCAATGAACTCACCATTTCCTTTGAAGGCGAAGTTTATGTTTTCCCTTCCGTAACTCCAGAAAAGGTGCAGGCTGTATTGTTATTTTTAGGAGGGCAGGAGACACCGAATACCGTCCCCACCTCCGACTTTTTGGTGCAGCAAAAATGTCAGGACATTTGGGGGATAAATGATCCTTCCCGTAGTTCAAAGCTTTCACGGAGAATTGAATCACTTGTTAGGTTCCGTGAAAAACGAAAAGAGAGATGTTTTGAGAAGAAAGTTCGGTACACTTGCCGTAAAGAGGTTGCTGAGAGGATGCAACGGAAGAACGGACAGTTTGCATCATTGAAGGAAGAGTACTGCTCTCCTGCTGAAAACCAGGACTCTAGCAACGTTACACCTTGCTCAGAATCTACTGAGCGTAGATGCCAACATTGTGGAATTGGTGAGAAGTGTACTCCAGTAATGCGTCGAGGACCAGCTGGTCCAAGATCTCTATGCAATGCCTGTGGGCTCACGTGGGCAAATAAGGGAACTCTGAGAGATCTCAGCAAAGCAGGAGGGATTGCTCTAGAACAGAATGAactgGATACTTCAACTGATATAAAGCCTTTAAAAACAGAGCCAGAAAATTCATGTCCTGCGCAGGACAAGGAgGAAAGCCCCCAGGAAACAAAGCCCGTGCTAATGGATGCCAGACAGCCACACGAGATGATAAATGAGCagTATATGCTCGAATCTGCTGAAGCGGTTCCTGACAATCTGTCCATTCAAGTGGAGGATAATGCTCTTGATCTGCTTGAGCAGGATTTTGCTGATGCTTCTGGGACTGAATTTGAGATTCCTGCAGTTTTTGATGATCTGaTTGATATCGATGATTCTAACATGAGGACTTACTGGCTATGA 972 0.4465 MVNSSQNGSMLHSVVSDEAEHEQPSLSRVNELTISFEGEVYVFPSVTPEKVQAVLLFLGGQETPNTVPTSDFLVQQKCQDIWGINDPSRSSKLSRRIESLVRFREKRKERCFEKKVRYTCRKEVAERMQRKNGQFASLKEEYCSPAENQDSSNVTPCSESTERRCQHCGIGEKCTPVMRRGPAGPRSLCNACGLTWANKGTLRDLSKAGGIALEQNELDTSTDIKPLKTEPENSCPAQDKEESPQETKPVLMDARQPHEMINEQYMLESAEAVPDNLSIQVEDNALDLLEQDFADASGTEFEIPAVFDDLIDIDDSNMRTYWL 323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01651 323 PANTHER GATA TRANSCRIPTION FACTOR 28 17 314 IPR045280 GO:0006355
Tsu02g01651 323 MobiDBLite consensus disorder prediction 234 248 - -
Tsu02g01651 323 Pfam GATA zinc finger 165 201 IPR000679 GO:0006355|GO:0043565
Tsu02g01651 323 Pfam tify domain 30 59 IPR010399 -
Tsu02g01651 323 ProSitePatterns GATA-type zinc finger domain. 165 192 IPR000679 GO:0006355|GO:0043565
Tsu02g01651 323 Pfam CCT motif 96 137 IPR010402 GO:0005515
Tsu02g01651 323 SMART GATA_3 159 212 IPR000679 GO:0006355|GO:0043565
Tsu02g01651 323 MobiDBLite consensus disorder prediction 1 24 - -
Tsu02g01651 323 PANTHER GATA TRANSCRIPTION FACTOR 28 ISOFORM X1 17 314 - -
Tsu02g01651 323 MobiDBLite consensus disorder prediction 221 248 - -
Tsu02g01651 323 ProSiteProfiles Tify domain profile. 25 60 IPR010399 -
Tsu02g01651 323 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 161 212 - -
Tsu02g01651 323 Gene3D - 157 217 IPR013088 GO:0006355|GO:0008270
Tsu02g01651 323 CDD ZnF_GATA 164 207 IPR000679 GO:0006355|GO:0043565
Tsu02g01651 323 ProSiteProfiles CCT domain profile. 96 138 IPR010402 GO:0005515
Tsu02g01651 323 SMART tify_2 25 60 IPR010399 -
Tsu02g01651 323 Coils Coil 121 141 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01651 Tsu-Chr2 14521695 14526835 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01651 30 208 Tify Gene Family AT1G51600 56.989 9.66e-63 199
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Tsu02g01651 CCT 2.4e-14 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01651 - - mtr:MTR_4g093730 469.159