Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01633 ATGACTAGAAAGAAGATAGAAATAAAGAAAATCGACAACATAAGTTCGAGGCAAGTGACTTTCTCTAAGAGGAGGAAAGGGCTTTTCAAGAAAGCTCAAGAGCTTTCAACTCTTTGTGATGCAGACATTGCTCTTATGGTTTTTTCTGCAACTAGTAAGCTCTTTGAGTATGCTAGTACTTCAAgTATGGAACAAGTAATTGAAAGGCGTAATGGATATTCAGCAAATCATAGATTAATGGGCTATCCATCTACTGATCAGCTTCAGGTTGAGAGTGACTCCAATTACGACACTTTGTGCAAGAAATTAGAAGATAAATCTCGTGAACTGAGGCATTTGAATGGAGAAGATCTGCAAGAATTGACAGTACAAGAACTCCAGAAACTAGAGGCTATACTTAAAAGAAGTTTGTCCAGTGTTTCAAAAGTAAAGGATGAAATGTTTATGCAAGACATCGACACCCTTAAGAGAAAGGAAGTCAAACTGATAGAAGAAAACGAAAGATTGAAATATGTGGTACCAGACCTTATAAGTGGACAAATGCGACAATCATTGGAATCTGTTATTAGCGGATCATCTTATTTTGATGACAGTGACACATCTCTCAACTTGGGGTTAGTTTCCTTTAAATAA 633 0.3649 MTRKKIEIKKIDNISSRQVTFSKRRKGLFKKAQELSTLCDADIALMVFSATSKLFEYASTSSMEQVIERRNGYSANHRLMGYPSTDQLQVESDSNYDTLCKKLEDKSRELRHLNGEDLQELTVQELQKLEAILKRSLSSVSKVKDEMFMQDIDTLKRKEVKLIEENERLKYVVPDLISGQMRQSLESVISGSSYFDDSDTSLNLGLVSFK 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01633 210 CDD MADS_MEF2_like 3 78 IPR033896 GO:0000977|GO:0045944
Tsu02g01633 210 Pfam K-box region 91 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu02g01633 210 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu02g01633 210 Coils Coil 96 116 - -
Tsu02g01633 210 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Tsu02g01633 210 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu02g01633 210 PANTHER - 1 190 - -
Tsu02g01633 210 ProSiteProfiles K-box domain profile. 89 184 IPR002487 GO:0003700|GO:0005634|GO:0006355
Tsu02g01633 210 SUPERFAMILY SRF-like 2 88 IPR036879 GO:0003677|GO:0046983
Tsu02g01633 210 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu02g01633 210 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu02g01633 210 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu02g01633 210 Gene3D - 13 84 IPR036879 GO:0003677|GO:0046983
Tsu02g01633 210 PANTHER SERUM RESPONSE FACTOR HOMOLOG 1 190 - -
Tsu02g01633 210 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01633 Tsu-Chr2 14390762 14402200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01633 1 209 MADS-box Gene Family AT4G24540 47.748 8.25e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Tsu02g01633 K-box 2.2e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01633 - - aprc:113860188 256.144
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01633 02 14390762 14402200 Tsu02g01633 02 14390762 14402200 ECH