Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01625 ATGGGGCTTCATCACAGAAAATTACTATCAGTCTCTGACTGTATAGCCATCTGTCATGAGGAACAGTCTTGTGCCACAGATTGTGATGATGATTGCTTCAGAGCCTGCTATAGCTATAAccttccaccaccaccaccaccatctcatgatcacaaaaacaaaacctCTACTTACTTGATCATAAGTTTTTCTATTGTAGCTGCTCTTTTCCTTGTTTTATGCTGCTATGCTTTCTATGTCAAGTTTTTCTCCCATAGGAACAGGTCAAGAAGAACAACCTTATTAACAAGACAACAAACAGAACttggttttgttgttgatgaagaacatgatgatggTTCTGTTGTTGACCATCCCATATGGTATATTCGTACTCTTGGTCTTCATGAATCAATTATTAATGCAATCACTgttgttaaatataaaaaagatgaattCTTGATTGATGGGTCAGATTGTTCTGTTTGTTTGAGTGAgtttgaagaaaatgaaaatcttAGACTTTTGCCTAAGTGTAATCATGCTTTTCATTTACCTTGTATTGATACTTGGCTTAGATCACATACTAATTGTCCTATGTGTAGAGCTCCTATTGTTGTTGATCCTTTAAGAATTCCATCTATGGATCCTAATGTTTTTGTGGAAAGTTCTCATATGGAAGTTTTGGAAACTAGTGATGGAAATGGAATGGAAGATAGTGTTGTTATTCAGTTGAGaaatggagaagaagaagaagaggcaAATGAAGAGGTTGAGGAAGATGAGGGTTCTGGTTTAGAGATGGTAAATATGCAGCAACCAAGAAGATCAGTTTCTCTTGATTCTTCTTCTGCTGCTAAGATCAATCTTGCTCTATCCAATTTTCCATCAGTGGAAGAATCTCAAGGGAATTCTAATTCTAATAGGGAACATGTAGGAGAAGTCAATGAACAAGTTGGTTCAAAGAGGGTTGGTGAAAATGGAAATATGGTGAATATGCATAGTGCTCCTTGCTCAATGAAAAAGTCAAGATCCTTTAATGGAAAACATCTATTATCATTGCATAGCAGCAGTCAGAAGAAGATAAATCCACCAGTGAGAAGCTTTTGA 1089 0.3159 MGLHHRKLLSVSDCIAICHEEQSCATDCDDDCFRACYSYNLPPPPPPSHDHKNKTSTYLIISFSIVAALFLVLCCYAFYVKFFSHRNRSRRTTLLTRQQTELGFVVDEEHDDGSVVDHPIWYIRTLGLHESIINAITVVKYKKDEFLIDGSDCSVCLSEFEENENLRLLPKCNHAFHLPCIDTWLRSHTNCPMCRAPIVVDPLRIPSMDPNVFVESSHMEVLETSDGNGMEDSVVIQLRNGEEEEEANEEVEEDEGSGLEMVNMQQPRRSVSLDSSSAAKINLALSNFPSVEESQGNSNSNREHVGEVNEQVGSKRVGENGNMVNMHSAPCSMKKSRSFNGKHLLSLHSSSQKKINPPVRSF 362
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01625 362 CDD RING-H2_PA-TM-RING 152 195 - -
Tsu02g01625 362 MobiDBLite consensus disorder prediction 240 260 - -
Tsu02g01625 362 Pfam Ring finger domain 152 195 IPR001841 -
Tsu02g01625 362 SMART ring_2 153 194 IPR001841 -
Tsu02g01625 362 ProSiteProfiles Zinc finger RING-type profile. 153 195 IPR001841 -
Tsu02g01625 362 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 128 201 IPR013083 -
Tsu02g01625 362 MobiDBLite consensus disorder prediction 243 257 - -
Tsu02g01625 362 MobiDBLite consensus disorder prediction 342 362 - -
Tsu02g01625 362 PANTHER RING-H2 FINGER PROTEIN ATL54 21 350 - -
Tsu02g01625 362 SUPERFAMILY RING/U-box 141 201 - -
Tsu02g01625 362 MobiDBLite consensus disorder prediction 290 362 - -
Tsu02g01625 362 MobiDBLite consensus disorder prediction 290 307 - -
Tsu02g01625 362 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 21 350 IPR044675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01625 Tsu-Chr2 14328453 14329791 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01625 47 261 C3H Transcription Factor Family AT1G72220 41.667 9.89e-47 162
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01625 - - mtr:MTR_4g093830 505.753