Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01618 ATGGTTTGTTTGGGGTTTGATATGGTTGAAGTTGAAGCTCAAAGATTGGAACTTTGTTTGGTTAAGAGGAAAGAAGTGGGAAGAATTTTGTTTGGGTGGTTGGTGTTTCTGTTGTTTCTTAGTCCTGTGGTTGGTCTCAGACCCTTAAGGGATAAAACTGGCTCATGGGGTGATGAGTGGATTTTTTCCGGAAAAGACGAAAGCGACTTAGGTCCATTTTCACAATGGAATATAACTGGAACTTACAGAGGGACTTGGAAGTTTCTAGATACTACAAATGGCTCTTATAGATTTCCAGATATCagaaaaataaatggaaattCTGTAATTGAATTAGTTAGTACGCCCACAAAGATAACTGGTGTACATtatgttcagggGGTAGTAATATTCCATGATGTGTTTGACAACGAATACAATGTTGGTGGCGCTCAAATCAAAATAGAAGGTGTATATATATGGCCTTTCAGACAACTTCGAATGGTAGCCAACAGCGGAAAAGATGGAGGGTTGAATCAAGATGGAGATTATATTTTATCCAATCCGTATCATCTGCTTGGAGTTTTCTCATCTCAAGTATTCCAAGAATCTTCGCGACATACTATGTGGAAAAGAAAGCATTCTCCATTACATGGCATGGAGAAAAATTGTAATGTTGAAATTTCTGCTCGTGTTTCACGCTTGTCATCGTCAAAACATGAAGGGGAGCATGATTCTTTTCAGCTGGAAGGATTAATGGAAAGCCCATCCGTGGATGACGATGGAGATTGCATCTCACCGTTACAGTTAAATGCAACATCTATTAATATTGGAGTCTACTATAATAAAGCAGTGAACTATACCTTGATGGTTACTTTTGTCTCATTTTTACAAGTTCTTCTATTGATTCGGCAAATGGAGCATAGCAACACCCAATCTGGGGCTGCTAAGGTTTCAATAATAATGATCGGTCAGCAAGCTATAGTAGATGCTTATCTTTGTCTTGTACATCTGACTGCGGGAATACTAGTTGAGTCATTGTTCAATGCCTTCGCAACTGCTGCATTCTTCAAGTTTGTAGTTTTCTCAATATTTGAGATGAGGTATCTCCTTGCCATTTGGAAGGCAAGCCGTCCTTTGAGTAACGGTGAAGGTTGGGAAATAATGAGGCGAGAGCTTTCGGTTTTATACAGCCGTTTCTATGGGATCCTGTTGGGTGGCATTCTATTCATGTATGAGTTCCATAATTATTTGAGACCTATTCTGCTTCTTGTATACTCCTTTTGGATACCTCAGATAATCACCAACGTTATTCGTGATTCACGCAAACCACTGCATCCTCATTATATATTAGGCATAACCGTTACTCGGCTAGCAATCCCGTTATACGTTTTTGGTTGTCCTAACAACTTCTTACGCATAGAACCAGATCAGAGCTGgtgtgtttgtttgattttatttactGGATTTCAAGCCGCAATTCTCCTTCTTCAGCATTATCTCGGCTCCCGTTGGTTCATTCCTCATCAGATTCTACCTGAGAAATACAGCTATTATAGGAGATCTTCTCAGGATACAAATCATGCTACAGACTGTGTTATTTGCATGACAGCCATTGATCTCACGCCACGATCAAATGATTGCATGGTGACGCCTTGTGATCATTTTTTCCACACCGGCTGTTTACAAAGATGGATGGATATAAAAATGGAGTGCCCGACATGCCGACGTCCACTCCCTCCTGCATGA 1728 0.3929 MVCLGFDMVEVEAQRLELCLVKRKEVGRILFGWLVFLLFLSPVVGLRPLRDKTGSWGDEWIFSGKDESDLGPFSQWNITGTYRGTWKFLDTTNGSYRFPDIRKINGNSVIELVSTPTKITGVHYVQGVVIFHDVFDNEYNVGGAQIKIEGVYIWPFRQLRMVANSGKDGGLNQDGDYILSNPYHLLGVFSSQVFQESSRHTMWKRKHSPLHGMEKNCNVEISARVSRLSSSKHEGEHDSFQLEGLMESPSVDDDGDCISPLQLNATSINIGVYYNKAVNYTLMVTFVSFLQVLLLIRQMEHSNTQSGAAKVSIIMIGQQAIVDAYLCLVHLTAGILVESLFNAFATAAFFKFVVFSIFEMRYLLAIWKASRPLSNGEGWEIMRRELSVLYSRFYGILLGGILFMYEFHNYLRPILLLVYSFWIPQIITNVIRDSRKPLHPHYILGITVTRLAIPLYVFGCPNNFLRIEPDQSWCVCLILFTGFQAAILLLQHYLGSRWFIPHQILPEKYSYYRRSSQDTNHATDCVICMTAIDLTPRSNDCMVTPCDHFFHTGCLQRWMDIKMECPTCRRPLPPA 575
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01618 575 Pfam Ring finger domain 524 569 IPR001841 -
Tsu02g01618 575 PANTHER TRANSMEMBRANE E3 UBIQUITIN-PROTEIN LIGASE 1-LIKE 22 575 - -
Tsu02g01618 575 SUPERFAMILY RING/U-box 506 574 - -
Tsu02g01618 575 ProSiteProfiles Zinc finger RING-type profile. 525 569 IPR001841 -
Tsu02g01618 575 SMART ringv_2 524 569 IPR011016 GO:0008270
Tsu02g01618 575 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 510 575 IPR013083 -
Tsu02g01618 575 PANTHER RING ZINC FINGER PROTEIN 22 575 - -
Tsu02g01618 575 SMART ring_2 525 568 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01618 Tsu-Chr2 14290834 14297147 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01618 525 572 C3H Transcription Factor Family AT4G12190 39.583 1.55e-08 50.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01618 K23788 - gmx:100817871 1056.59