Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01612 ATGAGTTCATTTCTTCAACCTCATGCTAATGATTGTGAGCAAGACCATAGCTCTAAGGAATTTGAGTCCACATTTGAGGTGGAAGCCACCAAAGCAGTAGAAAATGATAAGGTGGAAGGAATTTTCTTGACATGGGAGGATCTTTGGGTGACAGTTTCAAATGGAAACAATGGAAGGAAACCAATACTTGAAGGTCTAAAAGGTTATGCTAAACCAGGACAGCTCTTAGCTATAATGGGTCCTTCTGGTTGTGGCAAGTCCACTCTTCTTGATGCCTTAGCAGGAAGATTAGGCTCTAAGACAAAACAAACTGGAAAAATCCTAATCAATGGCCGCAAACAAGCACTAGCTTATGGAACATCTGCATATGTAACAGAAGATGATACAATTTTGAATACACTAACAGTTAGAGAAGCTGTGTACTACTCAGCTCAACTTCAATTACCAGATTCAATGTCCAAATCAGAGAAACTAGAGAGAGCAGATTTCATAATCAAAGAAATGGGGCTACAAGATTCAATCAACACAAGAATTGGAGGATGGAAATCCAAAGGCATTAGTGGTGGACAAAAGAGGAGAGTTAGCATTTGCATTGAGATATTAACACATCCTCGACTTCTTTTCCTCGATGAACCAACTAGTGGACTTGATAGTGCAGCTTCTTATCATGTTATGAGTAGAATTTCtgctttaaataaaaaagatggtATTCAAATGACTATTATTGCATCAATTCATCAGCCAAGTAATGAAATTTTTCGACTTTTTCATAATCTTTGTCTTCTGTCTTCTGGGAAAACAGTTTACTTTGGACCTGTCTCTGCTGCAAATAAGTTTTTTTCATCAAATGGTTTTCCTTGCCCAAGTCTTCAGAGTCCTTCTGATCACTTTGTAAAAACAATTAACAAGGATTTTGAACAGGACCCTGAGAAAGGACTAAGTGGAGGGCTAAGCACAGAGGAAGCAATTCTCATTCTTGTTAAATCATATGATTTATCTGAAATTAGTCACCAAGTTCAAAAAGAACTTtctcaaattaaaaaaagggtGAGTTTTGTTACACCTCTAAGGGTGAGTTTTTGTGAGCTAAgatcacataaaaaaaaaaaattgatgaacaaATGGATGCAGGTCTTGGACACAATGGAGAAGAAAAGTCATGCTGATTTTTTAACACAGTGTCTCATTCTTACAAGAAGATCTTTTGTAAATATGTATCGCGAAGCAGGCTATTATTGGTTACGCCTACTTATCTATGGTGCATTGGCTTTAAGTCTCGGTACCATGTTCTTTCACATTGGTTCAAGCAGTGAATCAATTCAGGCTAGAGGTTCACTCCTTGTGTTTGTTGTTACATTTGTGACATTCATAACTGTTGGTGGATTCCCTTCTTTTGTGGAGGATATGAAGGTGTTTGAACTAGAAAGACTAAATGGACATTATGGTGTCACTGCATTTACCATTGGAAACACATTATCTGCAATTCCATTCTTGCTATTGATGTCATTGATCCCAGGAACATTGGTTTACTACCTAGTTGGACTTCACAAAGGACATGAACAATTTGTGTACTTCATATCTATGCTTTTCATTTCAGTCTTCTTAGTTGAAGGTCTCATGATGATTGTTGCAAGTATGGTTCCAAATTTCCTAATGGGAATAATAGTCGGTTCTGGAATTTTAGGGATGATGATGTTAGATGGTGGATTCTATAGACTACCAAGTGATATACCAAAGCCATTTTGGAAATACCCTTTGCACTATATTTCATTTCACAAATATGCATATCAAGGATTGTTCAAGAATGAATTTCAAGGTTTAACATTTACTACTAGCAATCAAGTTATAGTTAGTGGTGAAGATATATTGAAAGACTTGTGGCAAATGGAAATGAATTACTCAAAGTGGGTGGATTTTACTATTTTGGTTGGAATGACTTTAGTTTATAGAATTCTCTTTTTGATTATTATCAAAAGCATTGAGAAGGTGAAGCCTATGGTTGTAGCAATTAATTGTTCTCAAGAAAATTTTAGGTTCACTAAAGTGACTAGGAGCAGTGAGATTGATTAG 2070 0.3531 MSSFLQPHANDCEQDHSSKEFESTFEVEATKAVENDKVEGIFLTWEDLWVTVSNGNNGRKPILEGLKGYAKPGQLLAIMGPSGCGKSTLLDALAGRLGSKTKQTGKILINGRKQALAYGTSAYVTEDDTILNTLTVREAVYYSAQLQLPDSMSKSEKLERADFIIKEMGLQDSINTRIGGWKSKGISGGQKRRVSICIEILTHPRLLFLDEPTSGLDSAASYHVMSRISALNKKDGIQMTIIASIHQPSNEIFRLFHNLCLLSSGKTVYFGPVSAANKFFSSNGFPCPSLQSPSDHFVKTINKDFEQDPEKGLSGGLSTEEAILILVKSYDLSEISHQVQKELSQIKKRVSFVTPLRVSFCELRSHKKKKLMNKWMQVLDTMEKKSHADFLTQCLILTRRSFVNMYREAGYYWLRLLIYGALALSLGTMFFHIGSSSESIQARGSLLVFVVTFVTFITVGGFPSFVEDMKVFELERLNGHYGVTAFTIGNTLSAIPFLLLMSLIPGTLVYYLVGLHKGHEQFVYFISMLFISVFLVEGLMMIVASMVPNFLMGIIVGSGILGMMMLDGGFYRLPSDIPKPFWKYPLHYISFHKYAYQGLFKNEFQGLTFTTSNQVIVSGEDILKDLWQMEMNYSKWVDFTILVGMTLVYRILFLIIIKSIEKVKPMVVAINCSQENFRFTKVTRSSEID 689
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01612 689 SMART AAA_5 72 265 IPR003593 -
Tsu02g01612 689 CDD ABCG_EPDR 40 271 - -
Tsu02g01612 689 Pfam ABC-2 type transporter 392 604 IPR013525 GO:0016020|GO:0140359
Tsu02g01612 689 MobiDBLite consensus disorder prediction 1 20 - -
Tsu02g01612 689 PANTHER XENOBIOTIC-TRANSPORTING ATPASE-RELATED 33 682 - -
Tsu02g01612 689 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 43 278 IPR027417 -
Tsu02g01612 689 Gene3D - 43 311 IPR027417 -
Tsu02g01612 689 Pfam ABC transporter 66 214 IPR003439 GO:0005524
Tsu02g01612 689 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 33 682 - -
Tsu02g01612 689 ProSitePatterns ABC transporters family signature. 186 200 IPR017871 GO:0005524
Tsu02g01612 689 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 289 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01612 Tsu-Chr2 14182059 14219632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01612 62 271 Calmodulin-binding Proteins AT2G36910 27.103 4.04e-10 61.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01612 K05681 - gmx:100789571 1095.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01612 02 14182059 14219632 Tsu02g01612 02 14182059 14219632 ECH