Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01611 ATGGCTTCTTCCCTATCTCTCCCACATGGTTCTGAAATTAAAACAACTTGTTCAGAAAAATCACTCCAACGAAGTGTTCTAGACATTGAAACCACAACCACATTAGATGAAGTTGATGGTATATGCTTAACATGGAAGGATATATGGGTAAATACAATTTCATCAAATGGAAAGAATGGAAGCAAATCAATTCTTCAAGGATTAACTGGTTATGCTAAGCCTGGCCAACTCTTGGCCATAATGGGTCCTTCCGGCTGTGGCAAGTCTACGTTACTCGATACTTTAGCCGggAGATTGAGCTCAAACACAAGACAAACAGGGGAAATTTTGATAAATGGTCACAAACAAGAACTGTCTTATGGAACTTCGGCTTATGTCACACAAGATGATACATTATTGACAACTTTAACTGTTAGAGAAGCAGTGTACTATTCAGCTCAACTTCAATTACCTAACACAATGTCAAAGCAAGAGAAGAAAGAGAGAGCTGACTTTACAATCAGAGAAATGGGTCTACAAGAtgcaattaacacaagaattgGAGGATGGGGTGTAAAAGGAATAAGTGGGGGTCAAAAAAGGAGAGTGAGTATTTGCATTGAGATCATAACACGTCCAAGGCTTCTCTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCTTACTATGTTATGAAAAGAATTGCTACTTTGGATCATAAAGATGGCATTCAAAGAACTATTATCACTTCAATCCATCAACCTAGTACTGAAGTTTTTCAACTTTTTGATAATCTTTGTCTTCTGTCTTCTGGTAGAACTGTTTACTTTGGACCTGCCTCTGCTGCATGTGAGttttttgctttgaatggaTTTCCTTGTCCTCCACTCCAAAATCCATCTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGGATATTGAGGCGCAGACGGGAACAATGACCGCAGAAGAAGCAATTTGTATCCTCGTGAGTTCATATAAATCATCTGAAAGAAATCAAGATGTTCACAGTGAAGTAGCAGTATTATCTAAAAAGGACACAAGCTCAATGGATCATAAGAAGAAAGGGCATGCAGGGTTCCTTAATCAATGCTTAGTTCTTACCAAAAGATCATCAGTGAACATGTTTCGTGATCTAGGCTATTACTGGTTACGTTTAGGAATATATGTTGCATTGGCTATAAGTTTAGGCACTGTTTACTATAATTTGGGTACAAGTTATGGCTCAATTAAGGATCGAGGTTCACTTCTTTCATTCGTCTCTGGATTCTTAACTTTCATGAGTATTGGCGGATTTCCTTCCTTTGTGGAAGACATGAAGgtATTTCAAAGAGAAAGACAAAATGGGCATTATGGTGTGATTGCATATGTGATTGGGAACACATTTTCATCAATTCCATTTGTTTTATTGGTTACAATAATTCCTGCAGTTATAACCTATTACCTATCTGGCCTTCACAAAGGATATGAACACTTTTTATACTTCGCAAGTGTTCTATTTTCTAGTCTAATGTTAGTGGAAAGTTTAATGATGATAGTTGCAAGCATTGTTCCTAACTATCTAATGGGAATTATAACTGGTGCTGGAATTCAAGGAATCATGATTTTGATTGGTGGATTCTTCAAATTGCCAAATGATCTTCCTAAGATATTTTGGAAATATCCATTACACTATGTTGCATTTCATACATATGTGTTTGAAGGATTGTTCAAGAATGAATATGAAGGACTTaaatttcctataaaaaatggACCACAAGGCAAAACTAGTTACATCACTGGTGAAGTGATTTTGAGAGACACTTGGCAAAGTAACATGAGTTACTCAAAATGGGTTGATCTTGGAATTTTGCTAGGAATGATTGTTGTGTATCGTGTTTTGTTCCTTATAATCATTAAGATTACAGAGAAAGTTAAGCCTATTGTTGGATCATTATTATCTTGCATGTTTGTGTCTCCCAAAACAACAGTACATGTGGTGGAGAACCCTAATGCCACTCCTTTGCATCAAGAGGGCCTTAAGGTTGTTATCAAGAGGTGGAATGAGGAGGTGTATGGTAATCCAGTGGAGCGTAAGACCAATTTAGTGGAGAATATAAAAGTTCTTGATCTGAAGGGTGAAGAGTCGGGTATCTCGGAGGAGGAGGTGAAGCTTCGTAGAAGATGGTTTGAGGAGTTGTGGATGTTGTTGAAAAGTATTGACGCGTCAATTTTCCAACGGTCTAGGGCGAAATGGCTTAAGGAAGGTGATGCAAATACTAAATATTTTCATTCTACGGTTAAGATAAGAGGGAGGGCCACGGTATCTTTTTTCCAAAATCACTTTGCAAATGTGGAGTGGGAGCGACCAACTTTAGATGGGGTGGAGTTTCCGATGTTGTCCGACGACAGTAACAACTTATTGATAGCCCCGTTTACCTTTGAGGAAATTGAAGAAGTGGTTAAAGAGTGTGATGGTTCGAAATGTCCAGGTCCGGATGGTTTTAACTTTGCTTTCATTAAAGAATTTTGGGCTTTGATAAAGCATGAGGTGAGAATTTTCTTTGATCAATTCCATGGAAATGATTGTTTTCCAAGgtgtcttttatcttattttttgacGCTCATCCCTAAAATAAAATCTCCTCAATGCTTGGGTGACTTTCGTCCCATTTCTTTACTTGGGTGTTGGTACAAATTGTTAGCTAAGGTTTTGGCAGGAAGACTTGCGAGGGTGATTGGTATCTTGATTCCAAAGATACAGTCCGCGTTTTTGAAAGGGATGCAATTGGTAGAAGGAGTGGTGGTGGTGAATGAGGTTATTGATTCTGCAAAGAAAGCGGGAaaggattgtttgattttaaaggtAGATTTCGAAAAAGCTTATGActcggtggattggggttttctTGATTATATGCTTGGTAGATTTGGATTTTGCCCAAAGTGGCAGGCTTGGATGAAAGCTTGTGTGTGGGGTGGAAATGTGTCGGTATTGGTTAATGGTAGCCCTACTCAAGAGATACCAATAATGAGAGGTCTTAAGCAAGGCGATCCCCTGGCTCCACTTCTGTTTCTTTTGGTGGCTGAAGGGTTAGGTGGGCTAATGAGACGAGCGGTGGAAATTAATAGGTTTCGGCCTTTCTTAGTGGGTGATGGTGCGCCAGTCACTACAACATTTATAAGCTTTAGCAACAGTTTTTTACGCAACGGTTTTTGA 3213 0.3729 MASSLSLPHGSEIKTTCSEKSLQRSVLDIETTTTLDEVDGICLTWKDIWVNTISSNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLSSNTRQTGEILINGHKQELSYGTSAYVTQDDTLLTTLTVREAVYYSAQLQLPNTMSKQEKKERADFTIREMGLQDAINTRIGGWGVKGISGGQKRRVSICIEIITRPRLLFLDEPTSGLDSAASYYVMKRIATLDHKDGIQRTIITSIHQPSTEVFQLFDNLCLLSSGRTVYFGPASAACEFFALNGFPCPPLQNPSDHLLKTINKDFDQDIEAQTGTMTAEEAICILVSSYKSSERNQDVHSEVAVLSKKDTSSMDHKKKGHAGFLNQCLVLTKRSSVNMFRDLGYYWLRLGIYVALAISLGTVYYNLGTSYGSIKDRGSLLSFVSGFLTFMSIGGFPSFVEDMKVFQRERQNGHYGVIAYVIGNTFSSIPFVLLVTIIPAVITYYLSGLHKGYEHFLYFASVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGIMILIGGFFKLPNDLPKIFWKYPLHYVAFHTYVFEGLFKNEYEGLKFPIKNGPQGKTSYITGEVILRDTWQSNMSYSKWVDLGILLGMIVVYRVLFLIIIKITEKVKPIVGSLLSCMFVSPKTTVHVVENPNATPLHQEGLKVVIKRWNEEVYGNPVERKTNLVENIKVLDLKGEESGISEEEVKLRRRWFEELWMLLKSIDASIFQRSRAKWLKEGDANTKYFHSTVKIRGRATVSFFQNHFANVEWERPTLDGVEFPMLSDDSNNLLIAPFTFEEIEEVVKECDGSKCPGPDGFNFAFIKEFWALIKHEVRIFFDQFHGNDCFPRCLLSYFLTLIPKIKSPQCLGDFRPISLLGCWYKLLAKVLAGRLARVIGILIPKIQSAFLKGMQLVEGVVVVNEVIDSAKKAGKDCLILKVDFEKAYDSVDWGFLDYMLGRFGFCPKWQAWMKACVWGGNVSVLVNGSPTQEIPIMRGLKQGDPLAPLLFLLVAEGLGGLMRRAVEINRFRPFLVGDGAPVTTTFISFSNSFLRNGF 1070
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01611 1070 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 43 291 IPR003439 GO:0005524
Tsu02g01611 1070 Pfam ABC transporter 66 216 IPR003439 GO:0005524
Tsu02g01611 1070 Pfam ABC-2 type transporter 248 350 IPR043926 GO:0140359
Tsu02g01611 1070 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 12 674 - -
Tsu02g01611 1070 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 12 674 - -
Tsu02g01611 1070 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 60 283 IPR027417 -
Tsu02g01611 1070 ProSitePatterns ABC transporters family signature. 188 202 IPR017871 GO:0005524
Tsu02g01611 1070 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 874 1037 IPR000477 -
Tsu02g01611 1070 Pfam ABC-2 type transporter 368 579 IPR013525 GO:0016020|GO:0140359
Tsu02g01611 1070 CDD RT_nLTR_like 871 1045 - -
Tsu02g01611 1070 Gene3D - 47 362 IPR027417 -
Tsu02g01611 1070 SMART AAA_5 74 268 IPR003593 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01611 Tsu-Chr2 14169345 14177057 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01611 64 252 Calmodulin-binding Proteins AT2G36910 30.256 1.97e-10 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01611 K05681 - gmx:100794527 991.875
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01611 02 14169345 14177057 Tsu02g01611 02 14169345 14177057 ECH