Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01610 ATGGCTTCTTCTTCCCTATTTCTTCCGTCTAGTTGTGAAATTAAAGCTAGTAGTTCAGAATCATTCAAACAAAGTGTTCTAGATATTGAGGCAACAACCCCATTGGAAATAAGAAATAGAGAAGAATTAGGTGAAGTTGATGGTATATGCTTAACATGGAAAGATATATGGGTAAATACAATTTCATCAAATGGAAAGAATGGAAGCAAATCAATTCTTCAAGGATTAACTGGTTATGCTAAGCCTGGCCAACTCTTGGCCATAATGGGTCCTTCCGGCTGTGGCAAGTCTACGTTACTCGATACTTTAGCCGgAAGATTGAGCTCAAACACAAGACAAACAGGAGAAATTTTGATCAATGGTCATAAACAAGAACTATCTTATGGAACCTCGGCTTACGTGACACAAGATGATACATTATTAACAACTTTAACTGTTAGAGAAGCAGTGTACTATTCAGCTCAACTTCAATTACCAGACACAATGTCaaaggaagagaagaaagaaagagctGATTTTACAATCAAAGAAATGGGTCTACAAGAtgcaattaacacaagaattgGAGGGTGGGGTGTTAAAGGAATAAGTGGGGGTCAAAAAAGGAGAGTCAGCATTTGCATTGAGATCATAACACGTCCAAGGCTTCTCTTTCTTGATGAACCAACGAGTGGACTTGATAGTGCTGCTTCTTACTATGTCATGAAAAGAATAGCTTCTTTGGACAAAAAAGATGGAATTCAAAGAACTATTATTGCCTCAATTCATCAACCTAGTACTGAAGTCTTTCAACTTTTTCATAATCTCTGTCTTTTGTCTTCAGGTAGAACCGTTTACTTTGGACCTGCCTCTGCTGCATGTGAGTTTTTTGCTTTAAATGGATTTCCTTGTCCACCTCTGCAAAATCCATGTGATCATTTACTTAAAACTATAAACAAGGATTTTGATCAGAAAGAGCATGCAGGATTCCTTAATCAATGCTTAGTTCTTACCAAAAGATCATCAATGAACATGTTTCGTGATCTAGGCTATTATTGGTTACGCTTAGGAATATATGTTGCATTGGCTATAAGTTTAGGCACTGTTTACTTTAATTTGGGTACAAGTTATGGCTCAATTAAGGATCGAGGTTCACTTCTTTCATTTGTCTCTGGATTCTTAACTTTCATGAGTATTGGTGGATTCCCTTCCTTTGTGGAAGACATGAAGGTAGTATTTCAAAGAGAAAGACAAAATGGGCATTATGGAGTGATTGCATATGTGATTGGGAACACATTTTCATCAATTCCATTTGTTTTATTGGTTACAATAATTCCTGCAATTATAACCTATTACCTATCTGGCCTTCACAAAGGATATGAACACTTTTTATACTTTGCAAGTGTTCTATTTTCTAGTCTAATGTTAGTGGAAAGTTTAATGATGATAGTTGCAAGCATTGTTCCTAACTATCTAATGGGAATCATAACTGGTGCTGGAATTCAAGGAATCATGATTTTGATTGGTGGATTCTTCAAATTACCAAATGATCTTCCTAAGATATTTTGGAAATATCCATTACACTATGTTGCATTTCATACATATGTGTTTGAAGGATTGTTCAAGAATGAGTATGAAGGACTCAAATTTCCTATACAAAATGGACCACAAGGCACAAATGGTTACATTACTGGTGAAGTGATTTTGAGAGATACTTGGCAAAGTAACATGAGTTACTCAAAATGGGTTGATCTTGGAATTTTACTAGGGATGATCCTTTTGTACCGAGTTTTGTTCCTTCTTATTATCAAGATCAAGGAGAAGATGAAGCCTATTGTTGGATCATTATTATCTTGCACGTTGACGTTGGTGTCTCCGAAAACAACGATACATGTTGTTGAGAACGGCTCAAACACCACTCCTTTGCATTTAGAGGTTGTATAG 1923 0.3531 MASSSLFLPSSCEIKASSSESFKQSVLDIEATTPLEIRNREELGEVDGICLTWKDIWVNTISSNGKNGSKSILQGLTGYAKPGQLLAIMGPSGCGKSTLLDTLAGRLSSNTRQTGEILINGHKQELSYGTSAYVTQDDTLLTTLTVREAVYYSAQLQLPDTMSKEEKKERADFTIKEMGLQDAINTRIGGWGVKGISGGQKRRVSICIEIITRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIIASIHQPSTEVFQLFHNLCLLSSGRTVYFGPASAACEFFALNGFPCPPLQNPCDHLLKTINKDFDQKEHAGFLNQCLVLTKRSSMNMFRDLGYYWLRLGIYVALAISLGTVYFNLGTSYGSIKDRGSLLSFVSGFLTFMSIGGFPSFVEDMKVVFQRERQNGHYGVIAYVIGNTFSSIPFVLLVTIIPAIITYYLSGLHKGYEHFLYFASVLFSSLMLVESLMMIVASIVPNYLMGIITGAGIQGIMILIGGFFKLPNDLPKIFWKYPLHYVAFHTYVFEGLFKNEYEGLKFPIQNGPQGTNGYITGEVILRDTWQSNMSYSKWVDLGILLGMILLYRVLFLLIIKIKEKMKPIVGSLLSCTLTLVSPKTTIHVVENGSNTTPLHLEVV 640
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01610 640 Pfam ABC-2 type transporter 256 313 IPR043926 GO:0140359
Tsu02g01610 640 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 291 IPR027417 -
Tsu02g01610 640 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 51 299 IPR003439 GO:0005524
Tsu02g01610 640 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 317 636 - -
Tsu02g01610 640 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 317 636 - -
Tsu02g01610 640 SMART AAA_5 82 271 IPR003593 -
Tsu02g01610 640 Pfam ABC transporter 74 224 IPR003439 GO:0005524
Tsu02g01610 640 Gene3D - 54 290 IPR027417 -
Tsu02g01610 640 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 14 318 - -
Tsu02g01610 640 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 14 318 - -
Tsu02g01610 640 ProSitePatterns ABC transporters family signature. 196 210 IPR017871 GO:0005524
Tsu02g01610 640 Pfam ABC-2 type transporter 326 538 IPR013525 GO:0016020|GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01610 Tsu-Chr2 14160000 14166409 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01610 72 284 Calmodulin-binding Proteins AT2G36910 28.767 2.64e-11 65.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01610 K05681 - gmx:100813462 880.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01610 02 14160000 14166409 Tsu02g01610 02 14160000 14166409 ECH