Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01603 ATGTCTTCCCTTATTACAGCTGTCCCTAATATTCTAGAAACTAGAGAGAAGGTATCAAGCAATAATGGAggaggaagagaagaagagaagggaATTTGTTTGACATGGAAGGATCTATGGGTGACAGTTGATGCTTCTTCCAAAggaaagatgaaagaaagcaaATCAATTCTTGATGGTTTAACTGGTTATGCAAAACCAGGTCAGCTTTTGGCCATAATGGGTCCTTCTGGTTGTGGAAAATCTACACTTCTTGATGCTTTAGCAGGGAGATTAGATTCTAACACAAGACAATCAGGAGAGATTCTGATCAATGGCAACAAACAAACATTGGCTTATGGAACCTCGGCATATGTGACACAAGATGATACATTATTAAATACATTAACCGTTAAAGAAGCAGTGTACTATTCAGCTCAACTTCAATTACCAGACACAATGTCaaaggaagagaagaaagaaagagctGATTTTACAATCAAAGAAATGGGTCTACAAGAtgcaattaacacaagaattgGAGGGTGGGGTGTAAAAGGAATAAGTGGGGGTCAAAAAAGAAGAGTCAGCATTAGCATTGAGATTCTAACACGTCCTAGACTTTTGTTTCTTGATGAACCAACTAGTGGACTTGATAGTGCTGCTTCTTACTATGTCATGAAAAGAATAGCTTCTTTGGACAAAAAAGATGGAATTCAAAGGACTattattgcctcaatccatcaACCTAGTACTGAAGTTTTTCAACTTTTTCATAATCTTTGTCTTTTGTCTTCTGGTAAAACTGTTTACTTTGGACCTGCTTCTGCTGCATCTAAGTTTTTTGCTTCAAATGGTTTTCCTTGTCCTTCTCTCCAAAATCCATCTGATCATTTACTTAAAACTATAAACAAGGATTTTGACCAGGATATTGAGATGGATTTAGCAGAGATCAACAAAACAATTTCCACAGAAGAAGCAATTGGTATCCTTGTGAGCTCATATAAATCATCTGAAAGAAACCAAGAAGTGAAAAATGAAGTAGCAATACTATCTAATAAGGATAACAATTCAACatacaagaagaaaaaacatgCTGGTTTCCTTAATCAATGTTTAGTTCTTACAAGAAGATCTTTTGTGAACATGTTTCGTGATCTTGGCTATTATTGGTTACGTTTTGGCATATATATTGCATTGTGTATAAGTTCAGCCACTATCTTTAATGGTTTGGATAAAAGTTATGGCTCAATTCAGGATAGAAGTTCATTTCTTATGTTTGTGTTTTCATTCCTTACTTTCATGACCATTGGTGGATTCCCTTCTTATGTGGAAGATATGAAGGTATTTGAACGTGAAAGACTAAATGGACATTATGGTGTTACAGCATATGTGATTGGGAACACATTTTCATCAATTCCATATTTGTTGATGGTTTCACTGATTCCTGGAGCTATAGCATATTTTCCTCCTGGTCTTCAAAGTGGATTTGAAcactttatatattttatttgtgcTCTATTTGCTTGTCTAATGTTAGTAGAGAGTCTTATGATGATAGTTGCAAGCATTGTTCCTGATTTTCTAATGGGAATCATAACTGGTGCTGGAATTCAAGGAATGATGATGTTGTCTGGTGGATTCTTTAGATTACCAAATGATCTTCCAAAGCCATTTTGGAGATATCCTATGTTCTATATTTCATTCCATAGATATGCTTTTCAAGGATCTTATAAAAATGAGTTTGAAGGACTAAAATTTAGTAGAGATGGTGAAATTGGTGGTTACATTAGTGGTGAagagattttgagaaataaatttCATGTAGATATGAGTTACTCAAAGTGGGTTGATCTTGGAGTATTGTTAGGTATGATTGTTTTGTATAGAGTTTTGTTTTTGATTATTATCAAAACTACTGAAAAGCTGAAACCTATTGTTGTATCATATATGTCAATGTCTCCTAGGAAAACATTACAAGTCTTGGAGAAACCTAGTACTACTCCTTTACATGGAGAAATTGTATAA 2007 0.3184 MSSLITAVPNILETREKVSSNNGGGREEEKGICLTWKDLWVTVDASSKGKMKESKSILDGLTGYAKPGQLLAIMGPSGCGKSTLLDALAGRLDSNTRQSGEILINGNKQTLAYGTSAYVTQDDTLLNTLTVKEAVYYSAQLQLPDTMSKEEKKERADFTIKEMGLQDAINTRIGGWGVKGISGGQKRRVSISIEILTRPRLLFLDEPTSGLDSAASYYVMKRIASLDKKDGIQRTIIASIHQPSTEVFQLFHNLCLLSSGKTVYFGPASAASKFFASNGFPCPSLQNPSDHLLKTINKDFDQDIEMDLAEINKTISTEEAIGILVSSYKSSERNQEVKNEVAILSNKDNNSTYKKKKHAGFLNQCLVLTRRSFVNMFRDLGYYWLRFGIYIALCISSATIFNGLDKSYGSIQDRSSFLMFVFSFLTFMTIGGFPSYVEDMKVFERERLNGHYGVTAYVIGNTFSSIPYLLMVSLIPGAIAYFPPGLQSGFEHFIYFICALFACLMLVESLMMIVASIVPDFLMGIITGAGIQGMMMLSGGFFRLPNDLPKPFWRYPMFYISFHRYAFQGSYKNEFEGLKFSRDGEIGGYISGEEILRNKFHVDMSYSKWVDLGVLLGMIVLYRVLFLIIIKTTEKLKPIVVSYMSMSPRKTLQVLEKPSTTPLHGEIV 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01603 668 Pfam ABC-2 type transporter 364 575 IPR013525 GO:0016020|GO:0140359
Tsu02g01603 668 Gene3D - 40 319 IPR027417 -
Tsu02g01603 668 SMART AAA_5 67 256 IPR003593 -
Tsu02g01603 668 Pfam ABC transporter 59 209 IPR003439 GO:0005524
Tsu02g01603 668 PANTHER ABC TRANSPORTER G FAMILY MEMBER 11 26 664 - -
Tsu02g01603 668 PANTHER WHITE-BROWN-COMPLEX ABC TRANSPORTER FAMILY PROTEIN 26 664 - -
Tsu02g01603 668 ProSitePatterns ABC transporters family signature. 181 195 IPR017871 GO:0005524
Tsu02g01603 668 Pfam ABC-2 type transporter 241 296 IPR043926 GO:0140359
Tsu02g01603 668 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 53 273 IPR027417 -
Tsu02g01603 668 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 34 284 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01603 Tsu-Chr2 14085556 14090506 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01603 57 269 Calmodulin-binding Proteins AT2G36910 28.767 9.59e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01603 K05681 - gmx:100813462 1003.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01603 02 14085556 14090506 Tsu02g01603 02 14085556 14090506 ECH