Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01594 atgaatgtaATTGGAGCAAGTGTTGGTGGTGGTGATCATATAAAGATCACTAATCACTCTTCAATTGGTCCTCCTTTGAGTGCCATTGATAGATTCTTATGGAGTCAACAAAACCATTTGCCTCAAAAGAAACTTCAACAAAGTGTTGATGATCAAAATATGTGTAGCTTTGGTTGTTCTAATGCTTCAACACATAGTTTTATGTGgcctaataataatatgatcaTGACTCAAGAAGCTAGCTATTTTGATCATCTATTGGCAAATGAAGAGGTGATGAATTGGACACACCAAATTCCTTCATTGTGTGTGGAGAAAGATGTGGTCAATGGTTTAGGGGAGGGAACAAAAATGGTTGGAAGAAAACATAAGAAAgtgtcttctttttctttgatcAAAGGACAATGGACGAATGAAGAAGACAgGAAATTGATGAAGTTGGTGAAGCAATATGGTGTAAGAAAATGGTCTCAAATAGCTGAGAAGTTGGAAGGAAGAGCTGGAAAGCAGTGTCGAGAGAGGTGGTATAATCATCTAAGGCCTGATATTAAAAAAGATAGTTGGAGCGAAGAAGAAGAGAGGATACTAGTAGAAAGTCATGTCAAGATTGGAAACCGCTGGGCGGAGATAGCAAAGAAAATTCCTGGACGAACAGAGAATGCTATTAAGAATCATTGGAATGCAacaaaaagaagacaaaattCAAGGAGAAAGAACAAAAAGCCTAAAACCACAAATGGTAAACCACTATCTTCTATTCTCCAAGACTATATCAAAACTTTGACTCAAAATTCATGGACTATTACTACCACTACTACTTCTGCGTCTACCTCCATGTCAACATTAATCTCTGAGGACCCTTCTTCAAACCAATCCGACCTTGCTTTTTCCAACATATCTCATGAAAATTCATCATCACTTATAGATGAATCTTATGATGATGAACTTCTCTTCATGCAACAACTTTTCAAGGTGAATAATAATTCGGAACCTGTTGTTAACCCCTACTACAAGAAACACTCTTTAAACTCTTGTTCCTTGGATTATTCTTCCCAAACTAATAGTAATCAGATTCTCTATGATGTTAGTACTGATTGTGGATTTGTTCATTCCAATTCTAATTACCCTATGATGAATTACCATAATTTTGATCACTACCTTCCACCAATGTTGAATGGAAATCATCAAAACCAAAGTAATGTGGAGTTACAGCTTGGGAATATGAATTATTCGGATGGAAAGAGAGAGATGAATTTGTTGGAGCTGATTTCTTCTGCTCAGTTTTTTTAA 1290 0.3457 MNVIGASVGGGDHIKITNHSSIGPPLSAIDRFLWSQQNHLPQKKLQQSVDDQNMCSFGCSNASTHSFMWPNNNMIMTQEASYFDHLLANEEVMNWTHQIPSLCVEKDVVNGLGEGTKMVGRKHKKVSSFSLIKGQWTNEEDRKLMKLVKQYGVRKWSQIAEKLEGRAGKQCRERWYNHLRPDIKKDSWSEEEERILVESHVKIGNRWAEIAKKIPGRTENAIKNHWNATKRRQNSRRKNKKPKTTNGKPLSSILQDYIKTLTQNSWTITTTTTSASTSMSTLISEDPSSNQSDLAFSNISHENSSSLIDESYDDELLFMQQLFKVNNNSEPVVNPYYKKHSLNSCSLDYSSQTNSNQILYDVSTDCGFVHSNSNYPMMNYHNFDHYLPPMLNGNHQNQSNVELQLGNMNYSDGKREMNLLELISSAQFF 429
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01594 429 ProSiteProfiles Myb-like domain profile. 180 230 IPR001005 -
Tsu02g01594 429 ProSiteProfiles Myb-like domain profile. 133 179 IPR001005 -
Tsu02g01594 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 128 183 IPR017930 -
Tsu02g01594 429 Gene3D - 187 251 - -
Tsu02g01594 429 PANTHER MYB PROTEIN-RELATED 126 335 - -
Tsu02g01594 429 SUPERFAMILY Homeodomain-like 130 226 IPR009057 -
Tsu02g01594 429 CDD SANT 187 230 IPR001005 -
Tsu02g01594 429 SMART sant 132 181 IPR001005 -
Tsu02g01594 429 SMART sant 184 232 IPR001005 -
Tsu02g01594 429 MobiDBLite consensus disorder prediction 229 244 - -
Tsu02g01594 429 Pfam Myb-like DNA-binding domain 136 193 - -
Tsu02g01594 429 PANTHER MYB DOMAIN PROTEIN 64-RELATED 126 335 - -
Tsu02g01594 429 CDD SANT 136 179 IPR001005 -
Tsu02g01594 429 Gene3D - 132 184 - -
Tsu02g01594 429 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 184 234 IPR017930 -
Tsu02g01594 429 MobiDBLite consensus disorder prediction 218 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01594 Tsu-Chr2 14000218 14002672 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01594 23 323 MYB Transcription Factor Family AT5G58850 45.955 2.16e-78 248
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu02g01594 Myb_DNA-bind_6 2.5e-19 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01594 K09422 - gmx:100786295 358.221