Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01589 ATGGATTCTGCGTTATCCGTCACTTCAACCGCGCAGATTCTACTCTTCAGAGCACTCCACCGTCATTTCTCCGGCGCACCTTCTCGTTCACTCCTCCGTCGCCGTAACCTCAAATACTCTGCTACTTCATACACCAACCACTTTCGAATTCCGTCTTCCTCCACTTCTTTCACTTCTGTGCCGTTATCGCCTTCCCTCCGTAACTTCCACGCGCTTCTTTCACGAACTTCGTGTCGTACGCGCTGCGTTTCGAGCTCCGCTGCTTCCTTTGGTTCTTCTGCTGGCGGTGGAAATGGTGGTGCTGGAGTCGGAAATGgcggaggtggtggtggtggttctgGTGGTGAGTCTGGTGATGTTAGAATCAATTTGGTTGGTGATGTGGCTCAAGAGCTTTCATCACTTTCACCTGATGTTATCATTCTTGATGTTTCCGGAATGGTGTGTGGGGGATGTGCAGCATCTGTGAAAAGGATTCTGGAAAGTCAACCACAAGTGTCGTCTGCTAGTGTAAATTTAACAACAGAGACAGTAATAGTTTGGCCTGTATCCGAAGCAAAAGCTGCACCAAATTGGCAAAAGCAATTAGGGAAGACACTTGCAGAACATTTAACTAGCTGTGGTTTCAATTCTTGCCTTCGAGATTCAACAAGAGAAAATTTCCTACaaatttttgaaagaaagatGGAGGAAAGAAACAGACAATTAAAAGAAAGTGGTCGTGAGCTAGCTGTTTCCTGGGCTCTTTGTGCCGTATGTCTTGTTGGCCATCTCTCCCATCTCTTTGCAGCAAAGGCACCATGGATTCATGCATTTCATTCTGTTGGGTTTCATTTATCCTTGTGTTTGCTTACGTTACTTGGTCCCGGCCGCCAACTTATCCTTGATGGCTTAAAAAGCCTTTATAAAAGGGCGCCAAACATGAACAGCTTAGTTGGTCTTGGAGCTTTGTCATCATTCACAGTCAGTTCATTTGCGGTTTTGCTGCCGAAATTgGGTTGGAAGGCGTTTTTTGAGGAACCTATTATGCTGATTGCATTTGTCTTGTTGGGAAGGAATCTTGAACAGAGAGCTAAAATTAAAGCAACCAGTGATATGACAGGACTTCTTAGCATATTGCCATCTAAAGCTCGCCTTCTAGTTAATAATGGGGAAACAGATGCTGCCTCAGTTGTTGAAGTTCCTTCTGACAGTCTTTCCGTTGAAGATCAAATTATCATATTACCCGGAGATCGTATTCCAGCTGATGGAATTGTGAGAGCTGGTAGAAGTAGTGTAGATGAGTCAAGTTTCACTGGGGAGCCACTGCCAGTGACCAAAGAACTTGGGAGTGAGGTTGCAGCTGGAAGTATAAATCTTAATGGAACTCTTACAATAGAGGTGCGGAGACCAGGTGGTGAGACTGCTATAGGAGACATTATTCGTCTAGTTGAAGAGGCACAAAGTAGAGAAGCTCCTGTACAACGGTTGGCTGACAAGGTAGCAGGATACTTCACGTATGGAGTAATGGCAATCTCTGTTACCACATTTACATTTTGGAGTGCGCTTGGCCCACAGATTTTACCTGCTGCTGTATACCAAGGAAGTGCAGTTTCACTGGCTTTGCAGCTTGCATGCAGTGTTCTGATTCAAGTAGGGATTCCAATTGCAGCTGGAGCATTATTTCCTGTAAATGGTACCATGCTGACTCCATCAATTGCAGGGGCTCTTATGGGGTTGAGTTCCATTGGCGTAATGACTAACTCATTACTTTTAAGATTCAAGTTTTCCTTAAAGCAACAACAAATACATGGCACGTTGCCAAAGACCAAAACCTATGTTGAATCTGATCTGGCTCGTGGAAACAAGAAAATGAAGTATTCAAATTAG 1869 0.435 MDSALSVTSTAQILLFRALHRHFSGAPSRSLLRRRNLKYSATSYTNHFRIPSSSTSFTSVPLSPSLRNFHALLSRTSCRTRCVSSSAASFGSSAGGGNGGAGVGNGGGGGGGSGGESGDVRINLVGDVAQELSSLSPDVIILDVSGMVCGGCAASVKRILESQPQVSSASVNLTTETVIVWPVSEAKAAPNWQKQLGKTLAEHLTSCGFNSCLRDSTRENFLQIFERKMEERNRQLKESGRELAVSWALCAVCLVGHLSHLFAAKAPWIHAFHSVGFHLSLCLLTLLGPGRQLILDGLKSLYKRAPNMNSLVGLGALSSFTVSSFAVLLPKLGWKAFFEEPIMLIAFVLLGRNLEQRAKIKATSDMTGLLSILPSKARLLVNNGETDAASVVEVPSDSLSVEDQIIILPGDRIPADGIVRAGRSSVDESSFTGEPLPVTKELGSEVAAGSINLNGTLTIEVRRPGGETAIGDIIRLVEEAQSREAPVQRLADKVAGYFTYGVMAISVTTFTFWSALGPQILPAAVYQGSAVSLALQLACSVLIQVGIPIAAGALFPVNGTMLTPSIAGALMGLSSIGVMTNSLLLRFKFSLKQQQIHGTLPKTKTYVESDLARGNKKMKYSN 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01589 622 PANTHER ATP7, ISOFORM B 78 543 - -
Tsu02g01589 622 PANTHER ATP7, ISOFORM B 545 587 - -
Tsu02g01589 622 Pfam Heavy-metal-associated domain 142 204 IPR006121 GO:0046872
Tsu02g01589 622 SUPERFAMILY HMA, heavy metal-associated domain 140 183 IPR036163 GO:0046872
Tsu02g01589 622 SUPERFAMILY Calcium ATPase, transduction domain A 390 477 IPR008250 -
Tsu02g01589 622 Coils Coil 222 242 - -
Tsu02g01589 622 Pfam E1-E2 ATPase 372 542 - -
Tsu02g01589 622 Gene3D - 139 215 - -
Tsu02g01589 622 ProSiteProfiles Heavy-metal-associated domain profile. 139 213 IPR006121 GO:0046872
Tsu02g01589 622 Gene3D - 358 481 - -
Tsu02g01589 622 ProSitePatterns Heavy-metal-associated domain. 144 173 IPR017969 GO:0046872
Tsu02g01589 622 CDD HMA 142 198 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01589 Tsu-Chr2 13958918 13969862 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01589 299 556 Primary Pumps ATPases AT1G63440 35.448 3.35e-37 146
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01589 K17686 - gmx:100796210 787.334