Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01588 ATGTCTCATTTCGGTAGGTCAGGCCCTCCAGACATCTCCGATACCTACTCTCTCCTCGTTCTCAACATCACTTTCCGTACAACCGCCGATGACCTATTTCCTCTTTTTGATAAGTACGGCAAGGTTGTTGACATCTTCATCCCCAAAGATCGAAGaacCGGTGAATCGAGGGGTTTCGCTTTTGTGCGTTATAAGTATGCTGATGAAGCTTCAAAGGCTGTTGATAGGCTCGACGGAAGAATGGTTGATGGTCGTGAAATAACTGTTCAGTTTGCAAAATATGGTCCTAATGCTGAGAgaatTCAGAAAGGAAGGATTATTGAAACATCCCCAAGATCAAAAAGCTCAAGGAGCCGCAGTCCTAGCAGGAGAAGTAAGCATCGTGATGATTACAAAGACAAGGACTACAGGAGGAGAAGTCGCAGCAGGAGTTATGATAGGCATGAACGTGACAGGTACCGTGGGAGAGACAGGGACTATCGTCGCCGAAGCAGAAGCCGCAGTGCCAGTCCTGATCGCAAGGGTCGTGGAAGGGGGCGTCATGATGATGAGCGTCATAGTAGAAGCCGAAGCAGATCAGTGGACAGCCGCTCCCCTGCACGACGCAGTCCTAGTCCTAAAAGGAGTCCTTCTCGAAAGAGGAGTATTTCCCCTCAAAAGAGTGCTTCCCCCAGGAAAAGTCCACGTCGTGAAAGTCCTGATAATCGTAGCCGCGATGGAAAGTCTCCTACGCCTAATCGTAGCCATGATGGAAAGTCTCCTACGCCTAATCGTAGCCACGATGGAAAGTCTCCTACGCCTCGCAGTGTCTCACCACGAGGTCGCCCTGATGCTTCCCGGAGCCCGTCTCCTCGAAATTCAAATGGTGATGAATAA 876 0.4954 MSHFGRSGPPDISDTYSLLVLNITFRTTADDLFPLFDKYGKVVDIFIPKDRRTGESRGFAFVRYKYADEASKAVDRLDGRMVDGREITVQFAKYGPNAERIQKGRIIETSPRSKSSRSRSPSRRSKHRDDYKDKDYRRRSRSRSYDRHERDRYRGRDRDYRRRSRSRSASPDRKGRGRGRHDDERHSRSRSRSVDSRSPARRSPSPKRSPSRKRSISPQKSASPRKSPRRESPDNRSRDGKSPTPNRSHDGKSPTPNRSHDGKSPTPRSVSPRGRPDASRSPSPRNSNGDE 291
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01588 291 MobiDBLite consensus disorder prediction 100 291 - -
Tsu02g01588 291 Gene3D - 4 104 IPR012677 -
Tsu02g01588 291 MobiDBLite consensus disorder prediction 198 223 - -
Tsu02g01588 291 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 16 94 IPR000504 GO:0003723
Tsu02g01588 291 PANTHER SERINE/ARGININE-RICH SPLICING FACTOR SC35 1 291 - -
Tsu02g01588 291 PANTHER SERINE/ARGININE RICH SPLICING FACTOR 1 291 - -
Tsu02g01588 291 SMART rrm1_1 17 90 IPR000504 GO:0003723
Tsu02g01588 291 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 18 88 IPR000504 GO:0003723
Tsu02g01588 291 SUPERFAMILY RNA-binding domain, RBD 8 102 IPR035979 GO:0003676
Tsu02g01588 291 MobiDBLite consensus disorder prediction 224 246 - -
Tsu02g01588 291 MobiDBLite consensus disorder prediction 123 197 - -
Tsu02g01588 291 MobiDBLite consensus disorder prediction 247 266 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01588 Tsu-Chr2 13951586 13953774 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01588 13 92 Eukaryotic Initiation Factors Gene Family AT3G11400 33.750 5.18e-09 54.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01588 K12891 - gmx:100778928 288.115