LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g01575	ATGGCTATGTCTAACTCTTTCATTCATTTGGCCCTTTTCACATTGCTCCTCGTGCAGGGCATAGCCGGCATTGACCCAAATTTTTACGATGCTCATGCAACCTTCTATGGTGGTCCCTCAGGAGCTGGAACCATGCAGGGGGCTTGTGGTTATGGTGATCTCTACAAACAAGGATATGGACTTGCAAACACGGCACTAAGCACAGCTCTATTCAATAACGGAGCTACTTGTGGTGCTTGTTTTCAGTTAATTTGTGTCAACGACCCTCAATGGTGCATAAAGGGCGCAAGGCCAATCACAGTAACCGCAACAAATTTTTGTCCTCCAAATTTCGCCAAGCCTGGTGCTTGTAACCCACCACTAAAACACTTTGACTTGAGTTATAAAATGTTCACTTCTATTGCCTACGAAAAAGGCGGGTCTAAGACTGGATGGATTCCCATGAAACGCAATTTTGGACAAAAGTGGAATACTGGAGTGGTTTTGGTAGGACAAGCCTTGTCATTTCAAGTTACTACAAGTGATGGAAAAACTTTGGAGTTTTATTCAGTTTCTCCTTACAACTGGCAATTTGGACAGACTTATGAGAGTCGGGGATCACAGACACGGTTGTTGGACTTGAGATACTTATGGGCCACTAGCTTTATGAGCCTTGCCCAGTCTGAAATAATATATAACAATGTTCCTGATTTTTTGCATATGGGCATAGCCGGCATTGACCCAAATTTTTACGATGCTCATGCAACCTTCTATGGTGGCCCCTCAAGAGCTGGAACCATGCGTAAGTTCTAA	792	0.4381	MAMSNSFIHLALFTLLLVQGIAGIDPNFYDAHATFYGGPSGAGTMQGACGYGDLYKQGYGLANTALSTALFNNGATCGACFQLICVNDPQWCIKGARPITVTATNFCPPNFAKPGACNPPLKHFDLSYKMFTSIAYEKGGSKTGWIPMKRNFGQKWNTGVVLVGQALSFQVTTSDGKTLEFYSVSPYNWQFGQTYESRGSQTRLLDLRYLWATSFMSLAQSEIIYNNVPDFLHMGIAGIDPNFYDAHATFYGGPSRAGTMRKF	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g01575	263	PANTHER	EXPANSIN-A21-RELATED	140	198	-	-
	Tsu02g01575	263	PANTHER	EXPANSIN-A21-RELATED	12	140	-	-
	Tsu02g01575	263	SUPERFAMILY	Barwin-like endoglucanases	13	145	IPR036908	-
	Tsu02g01575	263	Pfam	Lytic transglycolase	64	140	IPR009009	-
	Tsu02g01575	263	Gene3D	-	21	149	IPR036908	-
	Tsu02g01575	263	PANTHER	EXPANSIN-A15	140	198	IPR002963	GO:0009664
	Tsu02g01575	263	PANTHER	EXPANSIN-A15	12	140	IPR002963	GO:0009664
	Tsu02g01575	263	Pfam	Expansin C-terminal domain	140	186	IPR007117	-
	Tsu02g01575	263	PRINTS	Expansin signature	58	72	IPR002963	GO:0009664
	Tsu02g01575	263	PRINTS	Expansin signature	85	96	IPR002963	GO:0009664
	Tsu02g01575	263	PRINTS	Expansin signature	114	131	IPR002963	GO:0009664
	Tsu02g01575	263	PRINTS	Expansin signature	99	109	IPR002963	GO:0009664
	Tsu02g01575	263	PRINTS	Expansin/Lol pI family signature	27	42	IPR007118	GO:0005576
	Tsu02g01575	263	PRINTS	Expansin/Lol pI family signature	45	63	IPR007118	GO:0005576
	Tsu02g01575	263	PRINTS	Expansin/Lol pI family signature	67	85	IPR007118	GO:0005576
	Tsu02g01575	263	ProSiteProfiles	Expansin, family-45 endoglucanase-like domain profile.	46	149	IPR007112	-
	Tsu02g01575	263	SUPERFAMILY	PHL pollen allergen	140	197	IPR036749	-
	Tsu02g01575	263	SMART	dpbb_1	63	150	IPR007112	-
	Tsu02g01575	263	ProSiteProfiles	Expansin, Cellulose-binding-like domain profile.	131	197	IPR007117	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g01575	Tsu-Chr2	13874772	13877854	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g01575	23	198	Expansin Gene Family	AT5G39280	48.673	5.85e-68	210

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g01575	-		-	zju:107415875	255.373