Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01574 ATGAATGCTTCATCTTTAACCTCAAGTCTAAGTATTTCAAATTCAAAGCAATTTCATCACCTTTCACAACTCTCAAGTAAACAACAAAGACCTTGTCAAGTGCACTTTGCAACAATTTCATGTAGAGCAACAAAGCTAGTGGAAGAAACCAAGAATGGATCAAATTTCTACAAAATGTTATCCGTGAATCCGAAAAACGCAACAATGGAAGAGATAAAGAAAGCTTATAGATCAATGGCACTTCAATATCATCCAGATGTGTGTCATGATCCTTCGATGAAAGAGGAATCAACGAGAATATTTGTTCGATTAAATGCAGCTTATGAAACTTTGTCGAATCCTAGGCTCCGTGAACAATATGATAGTGAATTGGGTTTGAGAAGAAGCAATATGatgaatatgaataatattgttAATGAAGAGATTTGGAGAAGTAGGTGGCAAGAACAAGTGGTTGAGTTGAAGAAAAGGTCTTCTAAACGTATGGGACAAAAAGGAAGTAGAATGAGGACACATAACATGAAAGATAGAAACTAA 537 0.3445 MNASSLTSSLSISNSKQFHHLSQLSSKQQRPCQVHFATISCRATKLVEETKNGSNFYKMLSVNPKNATMEEIKKAYRSMALQYHPDVCHDPSMKEESTRIFVRLNAAYETLSNPRLREQYDSELGLRRSNMMNMNNIVNEEIWRSRWQEQVVELKKRSSKRMGQKGSRMRTHNMKDRN 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01574 178 Pfam DnaJ domain 55 121 IPR001623 -
Tsu02g01574 178 Gene3D DnaJ domain 42 146 IPR036869 -
Tsu02g01574 178 CDD DnaJ 55 113 IPR001623 -
Tsu02g01574 178 ProSitePatterns Nt-dnaJ domain signature. 101 120 IPR018253 -
Tsu02g01574 178 PANTHER CHAPERONE PROTEIN DNAJ 20 CHLOROPLASTIC 2 177 - -
Tsu02g01574 178 MobiDBLite consensus disorder prediction 155 178 - -
Tsu02g01574 178 PANTHER CHAPERONE DNAJ DOMAIN PROTEIN 2 177 - -
Tsu02g01574 178 SUPERFAMILY Chaperone J-domain 35 120 IPR036869 -
Tsu02g01574 178 ProSiteProfiles dnaJ domain profile. 55 124 IPR001623 -
Tsu02g01574 178 PRINTS DnaJ domain signature 96 116 IPR001623 -
Tsu02g01574 178 PRINTS DnaJ domain signature 58 76 IPR001623 -
Tsu02g01574 178 PRINTS DnaJ domain signature 76 91 IPR001623 -
Tsu02g01574 178 SMART dnaj_3 54 116 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01574 Tsu-Chr2 13872430 13872966 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01574 57 122 C2H2 Transcription Factor Family AT1G74250 41.176 3.81e-07 47.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01574 - - gmx:100811478 199.134