Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01566 ATGGAAAACGCGATGAGCAACATGAAGAAGAAGGTTTTGAAGTTGAGGACTTTGAACGAGAATATTCCACCAATGCAGATCGAATTGGATGATACGAGAGGACGATATCTTCAATCAACAACGATGAGTCCAGGTTTTCAACCGTACGCTGAGAACATCGACTTCGGTTCGCCGCCGCTAGCACGATACTTCTACGCCGGCTCTCCGCTCGGTAAATCCAGTGACTCCTTCAATTCTCCGATTTTCGGCGCGAGCAAGTATAGGTCTACAAAATTGCAGTACTCCGGCGGCGGCACTAGTTCAGGGAACAGTAGCTTCGGTTCTCGCGGTAGATTATCTCTCTCGCCGCTTTCTTCGATTGAGAACTTTGAGAAAAAGTCACCGCCGATGTACAGAACACCGGTGAAAGGTGACGAGGAAGTTTTTGTGATGGATGATATTCAGGTGAGGCCAATGTCCGGTGGAAAGAGCGGaagatcttcatcatcatcttcttcctcaggTAGACGCTCCTCTTCCTCTTCGTCGTCGACGACGAAGAGTGTGTTTAAGACTGATATTTGCAAAGCGTGGGAAGATTCTGGAAACTGTCGCTATAACTCCAAATGCCAGTTTATCCACGGAAGAAAGGAGCTTCATCCAAATCGTCTCAGCATGAATCGTAAACCTGAGGCACAGATGGGCAGACAATCTGCTATACCAGGATCCTGGACATATAGCCCAAATAGCCGCGCTGGTTACAAACCTGCTGAGGTAGCTGAACCTGAAGCTGAACATGCAGTCAGAAGACTCGCAATTTCCCAACCAGCTTCACCTGAACCTCATTGTTCCCATGCCAATTCCAACACCATCAGTGAATGGTCACCACTGGATGATGGCATTGAAGTTGTCCTCCCAAATGGTTCGGGGAGAGATCCCTCTAGGGAGGAAGTTGAAGCGCACATTTTGGGAACTCTCAATCAGAGGACTACTAAAAGGAGACTACCAGTTTTTGATGCAATTTGCAAGGGGCAGTAA 1017 0.4661 MENAMSNMKKKVLKLRTLNENIPPMQIELDDTRGRYLQSTTMSPGFQPYAENIDFGSPPLARYFYAGSPLGKSSDSFNSPIFGASKYRSTKLQYSGGGTSSGNSSFGSRGRLSLSPLSSIENFEKKSPPMYRTPVKGDEEVFVMDDIQVRPMSGGKSGRSSSSSSSSGRRSSSSSSSTTKSVFKTDICKAWEDSGNCRYNSKCQFIHGRKELHPNRLSMNRKPEAQMGRQSAIPGSWTYSPNSRAGYKPAEVAEPEAEHAVRRLAISQPASPEPHCSHANSNTISEWSPLDDGIEVVLPNGSGRDPSREEVEAHILGTLNQRTTKRRLPVFDAICKGQ 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01566 338 SUPERFAMILY CCCH zinc finger 180 213 IPR036855 GO:0046872
Tsu02g01566 338 PANTHER ZINC FINGER C-X8-C-X5-C-X3-H TYPE PROTEIN 6 334 - -
Tsu02g01566 338 MobiDBLite consensus disorder prediction 149 179 - -
Tsu02g01566 338 Coils Coil 1 21 - -
Tsu02g01566 338 Gene3D - 174 215 - -
Tsu02g01566 338 MobiDBLite consensus disorder prediction 154 179 - -
Tsu02g01566 338 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 183 209 IPR000571 GO:0046872
Tsu02g01566 338 SMART c3hfinal6 182 209 IPR000571 GO:0046872
Tsu02g01566 338 ProSiteProfiles Zinc finger C3H1-type profile. 183 210 IPR000571 GO:0046872
Tsu02g01566 338 PANTHER CCCH ZINC FINGER/TIS11-RELATED 6 334 IPR045877 GO:0003729
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01566 184 214 C3H Transcription Factor Family AT1G68200 51.613 4.92e-06 45.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g01566 zf-CCCH 1.8e-07 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01566 - K18753 gmx:102665928 259.225