Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01558 ATGGAAGAGGCAAATAAGAAGGGAGGTGATGAAGTTAAGTACCGTGGTGTTAGAAGAAGGCCATGGGGAAAATTTGGGGTAGAGATTAGGGATCCATCAAAACCTACCGGAAGACAATGGTTAGGGACATTTGACACAGCTGAGGAAGCTGCGAGAGCTTATGATTGTGCTGCCATTCGTTTGCGGGGTGCTCTTGCCATTCTTAATTTTCCTGATGAATATAATTTTCATCTTTCTTCTTTATCGTCgtcgtcgtcatcatcatctacTTGTGCCATTGCAAGCACTTCTTCTACACAACATAAGGAAGTTATTGAGTTTGAGTATTTGGATAATAAGGTGTTGGAAGATCTTCTTGCGCCGTCGAAAGAAGAGAATgaaaaaaagaatgattaa 396 0.3763 MEEANKKGGDEVKYRGVRRRPWGKFGVEIRDPSKPTGRQWLGTFDTAEEAARAYDCAAIRLRGALAILNFPDEYNFHLSSLSSSSSSSSTCAIASTSSTQHKEVIEFEYLDNKVLEDLLAPSKEENEKKND 131
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01558 131 CDD AP2 13 72 IPR001471 GO:0003700|GO:0006355
Tsu02g01558 131 SMART rav1_2 13 77 IPR001471 GO:0003700|GO:0006355
Tsu02g01558 131 SUPERFAMILY DNA-binding domain 13 73 IPR016177 GO:0003677
Tsu02g01558 131 PANTHER ETHYLENE RESPONSE FACTOR 1 124 - -
Tsu02g01558 131 ProSiteProfiles AP2/ERF domain profile. 13 71 IPR001471 GO:0003700|GO:0006355
Tsu02g01558 131 Gene3D AP2/ERF domain 12 72 IPR036955 GO:0003700|GO:0006355
Tsu02g01558 131 Pfam AP2 domain 13 63 IPR001471 GO:0003700|GO:0006355
Tsu02g01558 131 PANTHER DNA-BINDING DOMAIN 1 124 IPR044808 GO:0003700|GO:0009873
Tsu02g01558 131 PRINTS Ethylene responsive element binding protein signature 14 25 IPR001471 GO:0003700|GO:0006355
Tsu02g01558 131 PRINTS Ethylene responsive element binding protein signature 37 53 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01558 Tsu-Chr2 13746318 13746713 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01558 11 119 AP2-EREBP Transcription Factor Family AT3G23230 60.345 8.11e-39 126
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu02g01558 AP2 1.1e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01558 - - gmx:100807295 154.066