LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g01553	ATGCAGTTTAAAATGTCAGATGAGGATGAGTATCGTTGTTTTGTTGGTGGCCTTGCATGGTCAACATCTGATAGAAAGCTAAAGGATACATTTGAAAAATTTGGCAAGCTTACCGAGGCCAAGGTGGTTGTTGATAAATTCTCTGGACGCTCTCGCGGTTTTGGATTTGTTACATTTGATGAAAAGAAAGCAATGGAAGATGCTATTGATGCTATGAATGGGATAGATTTAGATGGCCGAACTATTACTGTTGATAAAGCTCAGCCTCAACAAGGATCAACTAGAGACAGAGATGATGGTGATCGCTACCGAGAACGTGGTCGTGATCGTGACCGTGATCGAGATTATCGAGGTGGAGGTGGTCGAGGATCTAGTGATGGAGGATGCTTTAATTGTGGTAAGCCTGGTCATTTTGCTAGGGAGTGCCCTAGTGAAGGGGGTAGAGGGGGAAGGTATGGTGGCAGAGAAAGTAGATAtggtggaggtggtggtggtggtggctaTGGTCCAGAGAGAAACGGAGATCGTTCTTCTGGTGGTCGCAGCAGGGATGGTGGTAGCCGTGGAGATTCTGGAAATGACCGATACTATCGTGATCGTGATCGTGCTGGACCGTATGAACGACGTGGATCTGGAAGCTATCGCTGA	648	0.4429	MQFKMSDEDEYRCFVGGLAWSTSDRKLKDTFEKFGKLTEAKVVVDKFSGRSRGFGFVTFDEKKAMEDAIDAMNGIDLDGRTITVDKAQPQQGSTRDRDDGDRYRERGRDRDRDRDYRGGGGRGSSDGGCFNCGKPGHFARECPSEGGRGGRYGGRESRYGGGGGGGGYGPERNGDRSSGGRSRDGGSRGDSGNDRYYRDRDRAGPYERRGSGSYR	215

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g01553	215	ProSiteProfiles	Zinc finger CCHC-type profile.	129	144	IPR001878	GO:0003676\|GO:0008270
	Tsu02g01553	215	MobiDBLite	consensus disorder prediction	82	215	-	-
	Tsu02g01553	215	SMART	rrm1_1	12	85	IPR000504	GO:0003723
	Tsu02g01553	215	PANTHER	GLYCINE-RICH RNA-BINDING PROTEIN RZ1A	5	171	-	-
	Tsu02g01553	215	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	11	89	IPR000504	GO:0003723
	Tsu02g01553	215	SUPERFAMILY	RNA-binding domain, RBD	4	121	IPR035979	GO:0003676
	Tsu02g01553	215	PANTHER	TRANSFORMER-2-RELATED	5	171	-	-
	Tsu02g01553	215	Gene3D	-	125	183	-	-
	Tsu02g01553	215	MobiDBLite	consensus disorder prediction	176	208	-	-
	Tsu02g01553	215	SMART	c2hcfinal6	128	144	IPR001878	GO:0003676\|GO:0008270
	Tsu02g01553	215	MobiDBLite	consensus disorder prediction	91	120	-	-
	Tsu02g01553	215	Pfam	Zinc knuckle	128	144	IPR001878	GO:0003676\|GO:0008270
	Tsu02g01553	215	Gene3D	-	2	124	IPR012677	-
	Tsu02g01553	215	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	14	83	IPR000504	GO:0003723
	Tsu02g01553	215	SUPERFAMILY	Retrovirus zinc finger-like domains	111	148	IPR036875	GO:0003676\|GO:0008270

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g01553	Tsu-Chr2	13712349	13716179	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g01553	13	88	Eukaryotic Initiation Factors Gene Family	AT4G34110	35.526	1.16e-07	49.7

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g01553	-		-	gmx:100815224	246.514