LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g01523	atGGAGTGGATGCGAAAGACCAAGAAGACCAAAAAACCCCCACGATTGGAGCGAATGAACgccaaaaaaaacatcaattacCAACTCcccaccaccacaaccaccaccGTCACCGCCACCGTCACTTCTCCATCTCCAATTCCATCTTCCTCCGATGAAGAAACTAGTCTCCGTGTATTAGGCATCGATGGTGAATTCGATCGAATTTTTCAAAGTTTAGGTCTTTCTGGACCTGAAGATTTTGCTATCCCAACTCAAGATTGGGAAGCTAGAAAGGTTCGGTCTGTTTCTACAATTTCGGTTGCTGATGATGTTGCTGTTGCTGTTGCTGTTGTTAGggattctccttcttcttcggGTGAACATGGTGTTAGGGTTGTTGTTGATCCACTTATAAATGGTGAAAGGAGTGTTCTTTTTACTGATTCTGGTTCTTTTACTACTTCTCATGATTATGATAGTGATGGTGTTGGTGAGAGGAATTCGTTGTTTCCTCCTTCTGGTTGGATTAAACCCACTTTTTCTTCTTGGCAAAAAGGTGGCATGTTGGGAAAGGGTTCTTTTGGAACTGTTTATGAATGCTTCACTGACGATGGATTCTTTTTTGCGGTCAAGGAGGTGTCTTTGCTGGATGATGGTAGCCAGGGAAAACAGAGCATTTTCCAACTTCAGCAGGAAATATCTCTTTTGAGTCGGTTTCAACATGATAACATAGTTCGATATTATGGCTCAGACAAGACTGAAAGCACACTGTATATATTCCTTGAGCTTGTGTCAAAAGGGTCATTGGCCAGTCTTTATCAAAGCTATCACCTAAATGATTCTCAAGTTTCTGCATACACAAGACAGATTTTAAATGGCTTGAAGTATCTTCATGAACGTGATGTGGTCCATAGGGATATCAAGTGTGCCAATATACTGGTTGATGTAAATGGGTCGGTCAAGCTTGCAGATTTTGGATTGGCAAAGGCAACAAAATTGAATGATGTTAAATCAAGCAAAGGCTCCCCATACTGGATGGCCCCTGAGgTTGTTAACTTACGGAATCAAGGTTACGGGCTAGCAGCTGATATATGGAGTTTAGGGTGTACGGTTTTAGAGATGCTGACAAGGAAGCCACCTTACTTTGAATTGGAAGGAATGCAAGCAATATTTCGGATTGGCAGGGGTGAACCCCCACCGATTCCTGACTCTCTATCTAAAGATGCCCGAGATTTCATTCTTAAATGCTTACAAGTTAACCCAAGTAAACGCCCAACTGCAGCTCAGCTATCGGATCATCCATTTCTAAGGAGACGATCAAGCTCAGCTGATAATCATGAAAGCTTCATTCAATGCCTTAAAGGTTATTCTAATCATAACTCCACTTCAATCTCTAAGTTTGTGTACACCCAAACACACTCCTCATACTCATCTATACTTCGGTTTTCTGTTCAAAATCTTAGATTCACATCTAACACAACTGCAAAACCTCTTGTCATTGTGACACCTCTTGAAGTACCAGAAATTCAAGCCACCATAATCTGTTCCCAACGCCATGACATGCAGATTCGAGTTCGAAGCGGTGGACATGACTATGAAGGTATGTCCTATGTTTCTGAAGTTCCATTTGTTGTCATTGATCTCATAAACCTTCGAGAAATCCAAGTAGACGTAGAAAATAGCAATGCATGGGTTCAAGGAGGGGCAACTGTTGGCGAACTTTTGTACAAAATTAATGTACAAAGCAGGACTCTCAGCTTCCCTGCAGGTGTTTGTCCCACTGTTGGCATTAGCGGACTCATCAGTGGCGGCGGCTATGGATTCTTGATGCGTAAATATGGTCTTTCAGCCGATAATATACTTGACGCTCACGTAATTGATGTGAATGGTAGGGTTCTTGACAGAGAATCAATGGGCGAGGATTTGTTTTGGGCTATTAGAGGTGGTGGAGGAGCAAGCTTTGGAGTTATCATAGTATGGAAAATAAAACTAGTTCATGTTCCATCAACTGTGACATTGTTCAGTGTTCTTAGGACACTAGAACAAAATGCAACCAATCTTATTCACAAGTGGCAGTTGGTGGCAAATAAGCTTGATGATGATCTAAACATTAGGGTCATTCTGGAGAGGGTGAATTCAAGTGCTCAAACAAGGAAGCTAACAATAAAAGTCACATTTGAATCCTTATTTCTTGGAGGTGTAGATAGACTTATTCCCTTGATGCAAGAGGAGTTTCCAGAACTTGGTTTGGTTAGAGAAGATTGTACTGAGATGAGTTGGATTGAATCAGTTCTCTACCTTGCTGGATTTACAACTGGTCAACCACTTGAAGTTTTGTTGAATAGAACTCATAGTGGTGTGTTGTTTTTCAAGGCAAAATCTGATTATGTTGGAGATCCAATTCCTGATATTGGATTAGAAGGGATATGGCCAATGTTTTATGAAGACGAGGCGAGAAGGGCTGTGTTGATACTCACTCCTTATGGAGGCAAAATGGATGATATTTTGGAGTCGGAAATTCCATTCCCACATAGAGCTGGAAACATTTACCAAATTCAGCACTTGGTGTTTTGGCAAGAGGAAGGTGATGAGGTGGAAAAGAGGCACATCAATTGGATTAGAAGGCTCTATAGTTATATGGAACCTTTTGTTTCAAAGTCTCCAAGAACTGCATATGTGAATTATAGAGACCTTGATATTGGAGTGAATAATAACAATGGATACACAAGCTACAAGCAAGCTAGTATTTGGGGACTTAAGTATTTCAAGAACAACTTCAAGAAATTGGTCAAGGTTAAGACCAGTGTAGATCCTCTAAACTTcttcagaaatgaacaaagcaTACCGTCTCTTTCTCGTTTTGATAACATAACAATAGAGCATAATACATTGCCTTGTGTAGAAGGGATGCAATTAGAATTCCCTGGAGCAGGAATGTCATAA	2925	0.3959	MEWMRKTKKTKKPPRLERMNAKKNINYQLPTTTTTTVTATVTSPSPIPSSSDEETSLRVLGIDGEFDRIFQSLGLSGPEDFAIPTQDWEARKVRSVSTISVADDVAVAVAVVRDSPSSSGEHGVRVVVDPLINGERSVLFTDSGSFTTSHDYDSDGVGERNSLFPPSGWIKPTFSSWQKGGMLGKGSFGTVYECFTDDGFFFAVKEVSLLDDGSQGKQSIFQLQQEISLLSRFQHDNIVRYYGSDKTESTLYIFLELVSKGSLASLYQSYHLNDSQVSAYTRQILNGLKYLHERDVVHRDIKCANILVDVNGSVKLADFGLAKATKLNDVKSSKGSPYWMAPEVVNLRNQGYGLAADIWSLGCTVLEMLTRKPPYFELEGMQAIFRIGRGEPPPIPDSLSKDARDFILKCLQVNPSKRPTAAQLSDHPFLRRRSSSADNHESFIQCLKGYSNHNSTSISKFVYTQTHSSYSSILRFSVQNLRFTSNTTAKPLVIVTPLEVPEIQATIICSQRHDMQIRVRSGGHDYEGMSYVSEVPFVVIDLINLREIQVDVENSNAWVQGGATVGELLYKINVQSRTLSFPAGVCPTVGISGLISGGGYGFLMRKYGLSADNILDAHVIDVNGRVLDRESMGEDLFWAIRGGGGASFGVIIVWKIKLVHVPSTVTLFSVLRTLEQNATNLIHKWQLVANKLDDDLNIRVILERVNSSAQTRKLTIKVTFESLFLGGVDRLIPLMQEEFPELGLVREDCTEMSWIESVLYLAGFTTGQPLEVLLNRTHSGVLFFKAKSDYVGDPIPDIGLEGIWPMFYEDEARRAVLILTPYGGKMDDILESEIPFPHRAGNIYQIQHLVFWQEEGDEVEKRHINWIRRLYSYMEPFVSKSPRTAYVNYRDLDIGVNNNNGYTSYKQASIWGLKYFKNNFKKLVKVKTSVDPLNFFRNEQSIPSLSRFDNITIEHNTLPCVEGMQLEFPGAGMS	974

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g01523	974	SMART	serkin_6	177	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g01523	974	Pfam	FAD binding domain	491	627	IPR006094	GO:0050660
	Tsu02g01523	974	PANTHER	OS08G0158400 PROTEIN	437	947	-	-
	Tsu02g01523	974	Gene3D	Transferase(Phosphotransferase) domain 1	168	433	-	-
	Tsu02g01523	974	ProSiteProfiles	Protein kinase domain profile.	177	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g01523	974	Pfam	Berberine and berberine like	885	943	IPR012951	GO:0016491\|GO:0050660
	Tsu02g01523	974	Pfam	Protein kinase domain	178	430	IPR000719	GO:0004672\|GO:0005524\|GO:0006468
	Tsu02g01523	974	Gene3D	-	437	545	IPR016167	-
	Tsu02g01523	974	SUPERFAMILY	Protein kinase-like (PK-like)	175	479	IPR011009	-
	Tsu02g01523	974	Gene3D	-	664	881	-	-
	Tsu02g01523	974	ProSiteProfiles	PCMH-type FAD-binding domain profile.	487	661	IPR016166	GO:0071949
	Tsu02g01523	974	ProSitePatterns	Oxygen oxidoreductases covalent FAD-binding site.	491	524	IPR006093	GO:0016491
	Tsu02g01523	974	ProSitePatterns	Protein kinases ATP-binding region signature.	183	205	IPR017441	GO:0005524
	Tsu02g01523	974	Gene3D	-	549	943	IPR016169	-
	Tsu02g01523	974	SUPERFAMILY	FAD-binding/transporter-associated domain-like	437	662	IPR036318	GO:0050660
	Tsu02g01523	974	ProSitePatterns	Serine/Threonine protein kinases active-site signature.	296	308	IPR008271	GO:0004672\|GO:0006468
	Tsu02g01523	974	PANTHER	RETICULINE OXIDASE-LIKE PROTEIN	437	947	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g01523	Tsu-Chr2	13447669	13455304	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g01523	427	946	Miscellaneous Gene Families	AT4G20820	51.346	0.0	534

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	PK	STE_STE11	Tsu02g01523		Pkinase	4.8e-70	CL0016

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g01523	-		-	mtr:MTR_4g094418	803.127