Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01514 ATGGCTACCACAATTTCAATAACTTGCTTCATCTTTATTCCTATAATAATTTTATCATCATTATGTCCCATAACAACATTATGTGCAACAGTCCTAGAAGACCTCAAAAACTTACACAAACCACAAGATTTCAACACTACAATTTTCAACAACTGTATCAAAAACCCATCTCTTAGATACTGCAATTCTTCTCCTATGATAGACCTTGATGAAATATTCAAACACACTATTGTTGCTAGTCATCTTTGCAATGAATCCAGCAATCCCAATTGTGTTGAATCGTTCCCGAAAATCGATCTTCGAAACCGACCAAACATTGCATCTCTTTACTTGTCTTTCACTTTCTTTTGGAAATATTGTCCATTGAGTATTCTATCTATTGATTTCTCTAACAATTCTGTAAAGGGTAGTTTTCCAAATGATGTTCTTTATTGTACTCAAATTCAATCTCTTGATTTAAGTCTCAATGAATTTTCTGGTGAAATTCCTATTGAAAGTTTCTCTCCATTAACTAATCTCACTTTTCTTAACCTCTCTTATAACTGTTTCTCAGAGAGTGAATTTTCTGATTCACAGTTCTTCAAAATGTTTAATTCTTCTAGTTTTCTTCATTCTGGTGCTCTCATTGATCATAAAAAGTTTACTATAAAAGCTATCATTTTATTGGTTGGTTTTCCTATTCTTGTTATTTTGATGGTAATTTTCTTGGCATGGCTTTGTTTTCAAAGGCCTGATTTTCTTCCAAGAATACTTTATAGTAGAAGGTTTACATTTACGCCGGCAATTCTAAAGGCGGCAACTTACGGTTTTTCGAAGGAAAATTTGGTTGGTAAGAGTGATATTGTTCATATCTATAAAGGAGTGTTAAGAGATGGAACTAAAGTGAAAATTGAGATGTATTGGGATGATATATCAAGGGATAGTTATCATAAATTTGTTGAGGAATGTAAGATACTTTCTGAGTTAAACCATAAGAATCTTGTTAAGGTTTTAGGGTGGTGTAAAGGTAGAAAATTCAGGGCTATTATAACAGAATGGACAAAAGATGAAAATGTTGAAATGTGGCTATCAAGGGAAGCACCATCATGGAATCATAGAGTGAAAGTTTTGATGGGAGTTGTTGAATGTATGCTATATTTACATGATGAATGGCCTGAAGTTGATTATGATCTCAAGACAAGTAGTGTTTTGTTATCTGATAATCTTGAACCATTGATTTCAAGGTTTCAAGTTGGAGACAGAAACAACAGTAGAAAAAAGATATGCAAGTTTGGAGTATTTTTGCTAGAGATGATACTAAACAAGAGTATTCAAGAGGAGTTTGATGGAAATGATATTGGATTTCTTAGCTACATGAGAACCCTTCATCATGCAGAGTTGCAACAAATGATTGATGAAAGAATGGATTTAAATGAAACAACTTTgcatcaaattaaacaagcttTATCACTAGGATTAATGTGCATAGACCAATCAAACAATGAGCATCCAAGTTTGGCACATATATTGAATATTCTATCAAAGGCATATAAGGCTAACCTTGTTTTGACATCTACAAATCATAAAACATTTCACGGAGATAAAGTTAAGGGACACAAGCGAGTTCAGTTTAGATAA 1617 0.3234 MATTISITCFIFIPIIILSSLCPITTLCATVLEDLKNLHKPQDFNTTIFNNCIKNPSLRYCNSSPMIDLDEIFKHTIVASHLCNESSNPNCVESFPKIDLRNRPNIASLYLSFTFFWKYCPLSILSIDFSNNSVKGSFPNDVLYCTQIQSLDLSLNEFSGEIPIESFSPLTNLTFLNLSYNCFSESEFSDSQFFKMFNSSSFLHSGALIDHKKFTIKAIILLVGFPILVILMVIFLAWLCFQRPDFLPRILYSRRFTFTPAILKAATYGFSKENLVGKSDIVHIYKGVLRDGTKVKIEMYWDDISRDSYHKFVEECKILSELNHKNLVKVLGWCKGRKFRAIITEWTKDENVEMWLSREAPSWNHRVKVLMGVVECMLYLHDEWPEVDYDLKTSSVLLSDNLEPLISRFQVGDRNNSRKKICKFGVFLLEMILNKSIQEEFDGNDIGFLSYMRTLHHAELQQMIDERMDLNETTLHQIKQALSLGLMCIDQSNNEHPSLAHILNILSKAYKANLVLTSTNHKTFHGDKVKGHKRVQFR 538
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01514 538 Gene3D Transferase(Phosphotransferase) domain 1 421 509 - -
Tsu02g01514 538 Gene3D Phosphorylase Kinase; domain 1 252 346 - -
Tsu02g01514 538 Gene3D Transferase(Phosphotransferase) domain 1 349 420 - -
Tsu02g01514 538 Pfam Protein tyrosine and serine/threonine kinase 274 425 IPR001245 GO:0004672|GO:0006468
Tsu02g01514 538 SUPERFAMILY Protein kinase-like (PK-like) 252 510 IPR011009 -
Tsu02g01514 538 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 9 537 - -
Tsu02g01514 538 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 9 537 - -
Tsu02g01514 538 Gene3D Ribonuclease Inhibitor 32 212 IPR032675 -
Tsu02g01514 538 ProSiteProfiles Protein kinase domain profile. 270 538 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01514 538 SUPERFAMILY L domain-like 71 188 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01514 Tsu-Chr2 13394688 13396962 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01514 126 528 Receptor kinase-like Gene Family AT5G45780 22.547 8.23e-27 112
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Tsu02g01514 PK_Tyr_Ser-Thr 2.3e-13 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01514 - - gmx:100779045 804.283
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01514 02 13394688 13396962 Tsu02g01514 02 13394688 13396962 ECH