Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01512 ATGGTGACATTCTCTGTCGGTGGTTCCGACGACGGTGAAGGACCTAGCAACCCAAACCAGAAGCGCCGAAGGGTTGACGACGGAGAACAACCAGCACAAGCAAccacagaagaagaagaagaagagaaccAACAATCATCACAAGAAGGGTTCGAAATGGAAAATTCCCCAATTGGAACCCTAGAAAACGAAACAAATGAAGGAGCCTCCTCTGGATCCAACTCAGGACAAGCTAATGACATGTCTAAGAGCGTTTCTGCAGTTATTTCTGACCCTGATGTTCTTGATTGCTTCATTTGCTCTGAACCATTGTCAATTCCTATATTTCAGTGCGAGAATGGCCATATTGCTTGTTCTAAGTGTTGTGGCGAACTTATGAACAAATGTCCCATGTGCTTAATGCCAATTGGGTACAATCGTTGCCGGGCTGTGGAGAAGTTGCTGGAATCTATTAAAATATCATGCCCAAATGCAAATTATGGCTGTAAAGAAATGCTTAGTTGCAATATGAAAAGTAGCCATGAGAAGGAATGCATATATACACCATGCAAATGCCCACACACAGGTTGCGGCTTTCTTGCCTCATCCAAAGAGTTAGCTCTCCACTTCAGCCATAGGCATGTAGGTTTTGGAATACAATTTACATATGGCAAATACATATCTGTCTCTTTAAATATTCGTCAGAGAGAAATTGTTCTTATAGATCAAAATGATGCAACACTATTTATCGTTCACAATAACCTTAGGGCATTGGGAAATATGGTCCATATTAGTTGTCTTGGTCCGAAAGCGATGGCGGGTGTTGATTATGTTGTCAAGGCTAGGTCTGACGGAGCCAAATTGACACTGCAAACTCATGCGAATACCATTCAAGACAACAATGGGGTTGCTCCTAAAACTGGATATCTTTTGATTCCTTCAGATTATTTTGAATTTGGACAACTCAAATTGGATATTTGTATAAAGTCTCACTAA 975 0.4 MVTFSVGGSDDGEGPSNPNQKRRRVDDGEQPAQATTEEEEEENQQSSQEGFEMENSPIGTLENETNEGASSGSNSGQANDMSKSVSAVISDPDVLDCFICSEPLSIPIFQCENGHIACSKCCGELMNKCPMCLMPIGYNRCRAVEKLLESIKISCPNANYGCKEMLSCNMKSSHEKECIYTPCKCPHTGCGFLASSKELALHFSHRHVGFGIQFTYGKYISVSLNIRQREIVLIDQNDATLFIVHNNLRALGNMVHISCLGPKAMAGVDYVVKARSDGAKLTLQTHANTIQDNNGVAPKTGYLLIPSDYFEFGQLKLDICIKSH 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01512 324 MobiDBLite consensus disorder prediction 16 31 - -
Tsu02g01512 324 ProSiteProfiles Zinc finger SIAH-type profile. 150 208 IPR013010 GO:0008270
Tsu02g01512 324 MobiDBLite consensus disorder prediction 32 47 - -
Tsu02g01512 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 21 323 - -
Tsu02g01512 324 MobiDBLite consensus disorder prediction 1 84 - -
Tsu02g01512 324 MobiDBLite consensus disorder prediction 1 15 - -
Tsu02g01512 324 Pfam Seven in absentia protein family 140 292 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu02g01512 324 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 145 203 IPR013083 -
Tsu02g01512 324 SUPERFAMILY TRAF domain-like 150 321 - -
Tsu02g01512 324 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SINA-LIKE 4 21 323 IPR044286 -
Tsu02g01512 324 MobiDBLite consensus disorder prediction 48 84 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01512 Tsu-Chr2 13380975 13384140 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01512 93 308 C3H Transcription Factor Family AT2G41980 27.632 8.56e-18 80.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01512 K04506 - gmx:100778869 365.54