Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01491 ATGGAGACTGAAAGAGCAAAGGTTCCTAAAACAAACATGGAATCTGGGAAAACCAAGAGTATGAAGTCTGCTAGCTCTGAACAACCTAAGCCGGATAAGTCCGAAGATAAGCAGACTGAACAGAACAAAATCATTGTCCAACCTGATAATAAAGAGTATGATCCAGTTAAAATAGTTAACAAAAAGAAGGAAATATGGAGATTAGGAGTCATATTGGATGATATGTGGACTGTCTCCAAGGGAGAAACAGATGTCAGCCTTGAGTTATTGATCAGGGATATCAAGGGGAACACAATTCAAGCTTCAATATTGGAGAACGACATTGACCAGTGGAAACCAAAGCTTATTGAAGGAAATACTTATTACATGCATAATTTTCGAGTTCATGACAATGATACGGGTTTTAAAATGACCACACACAAGTACCGCTTAACATTTGTTGGTGCTACTAGAGTTAATGTTGCTGACATCCCTGGGATTCCCAGAACTCTTTTCAACTTTAAGGACTTTGCTGAGATCCTAGCTGGGAAATTTGAGCCAGATTTCTTAGTTGATGTAATTGGAGTTGTTGACTCTATGAAGAAGTGTGTTACTGCTACTAACACAAAAAAAGGAAATGCTGCATTTACTCTGAAGGATTTTAGGGAAAATGTCCTTGATTGCACCCTCTGGGATGGTTTATCTGCTGAATTTCTCAACTTTTACAACCAACAAACTGAAAATGGCCCACTTGTCATGATTATCAAGCATGCAAGGGTGAAGGAACCTCAAGGGGTGTACCCTTTACAAGTCACTAATGTCTGGAATGGGACAAAACTTCTGTTCGATCGTAATATACCTGAAAtcaaagatttcttcaacagTTTACCTAATGATAGGGTATACCCGGCCCGTAGTCTGGGAGCTGCCTCTTCGCAAGGGTGGAATTCTCAAACCTCAGGCGGTTCTCAATTTAATTCAGATGAGGATTTTATGAAGCAAGCACGTGTGATCAGATTGGGAGATATGAAAAAACTTAAATCGGAGACTTTCTGTGTTACTGTTGTGACCACTTCACACATTAAGGTTTCAAACCAAGGTTGGTTCTTCAGAGCATGTACTGATTGCTCTTGCAAGGCTGAGGGAATTGCACCACCCTATACATGTAGAAAAGAACACAAGTCATATAATCCGACAATCAAGTATAAATTGGATGTTGAAGTCTATGATGGTGATGATACTGCAAAATTCATTTTTTGGGACAATACTCTACATGAACTGCTTGGCATGACTGCAGCCACGCTACTTGAGAAACAGCTACAGATTGGTCTTGGCGACCCACAGGAATATCCTAACTGCATTGATGATATCATGGAAAGGAAACTTGCATTTAGAGTTAAGTGGCAACCAGGTTGGGGAGGCCAGGCTTCAGTATTGCTCTGTAAGGATTGCAACGACTTAGTTGCTAAGATCGAAGAACAATTACCTGTTGCAGAGAGTTCATCCAAAGACATCCAACCTATACAGGAAGATGTTGTTGCTATCCTTGATTCTCCTCCAATCCAGCGCTTTACCCAAACTGATATTGACAAGTTTGCTTCCTTAGATGATTCAATCCTATCTACgCCAAACATTTCCGCGTCTGCTGAGAATGATCTTTCTACTTCTTCTCAGAAAACTCCTGCAAAGAGGAGCGCTACAAAACCAATCAACGTGGACAGCACCAACCCTGATTCACAGTTCTCAGCTACCAGATCTGGAAAACTTATCAAGAAGGAGAAGATTAACACATCTTCTGGAAAAGAAAATTCGGACATTGCACATCCCAAACACTTACACCAATGTTTGGAGAGATCTACCACCATAAAAGCAAGGGCTGCAACATCGGAAAATGCTTCACCAGTCGGGACaatacaaaaaatttcattccaaAGTACCCCTGTTATTAACCAACAATCAAATGTTAGGACATCACATACTCCGATATCTTCTACTAGAAAGAACACTCCATTGAGTGATATCACTTCCTCTTTTAGAAACCAACAGAATACGAAATTCGTGGGAAGTGGTAACTCCAGTAATGCTAAATTAAAGTCTAAGCAAACATTGCAGGCCAAAAGCCGACCTCTTAAACACAATTTCACAGTTAACTTGGCAAACAAGTTTGACGCTGTTAATACAGTTGCCACCAATATTGACCATGTTGAGATTGCTACAGAAGTCACAAACCAACACTCACTTAGTACAGTCAAGAGGAAACATGTACAATCTGATGTTGTTGCGCCAGAAGTTGCATCCAATTCAGACTCTTCAACAAGTAGTGAAGAAGATAACTTTGAAGATGAGACAGATAGCGACACTGATAATGATGATTTGAATGGCATAACATCTGCTACAAACTCAATTTCTTTACAAGGCTATTCTGATATTGGGGATCCTCTTTGTGAATGTGAAGCATGTGGAGCTCAAATGTGGTATCAAGAAAGACGTCAAAAAGCAAGACATTGTGCTAACCCAACTTTTCAAATGTGTTGTGCTAATAGTAAAGTTCAATTGCCTTTGCTAAACCAACCACCTGGTTGTCTTCAAGAATTACTGTTTGATAGGAATTCCAAAGAAGCATTACATTTCCAACAGAATATCAGAATGTACAATGCCATGTTTTCTTTCACGTCACCTGGTATGAAGTTTGATAAAAGATTTAACCGTGGTAGGGGTCCTCCAAATATACGGCTGCATGGTCAGCCATGTCATCGAATGGGTAGTATGTTACCAAATGACGGTGTTCCTCCGAAATTTGCTCAACTCTACATTTATGACACCGATAACGAGGTGGCTAATCGCATTAATAGTTGCGGTAACAACAAATCTATTGATGCACATATTGTAATAAGGTTGGGTCAGATGCTTGATCAACACAATGTTCATGCTAAAGCTTTTAGGATGGCCAGAGATAGATTACATAATGAGGATGTGAAAGAATTGAAACTCATATTAATACATGATAGGAAAACTGATGCAAGAATTTACAATAAACCAACCGTTTCTGAAGTTGCTGCTCTAATAGTAGGTGATGTTGATGCAGGAGATACCCGAGATATCATAATTCAAGAGAAGGGTGGAAAACTCGAAAGAATTAATGAATTTCATCCAGCATACCTTGGTTACCAATATCCCCTACTCTTTCCATACGGTGAGGATGGATTTAGACGCGGAACACTACACAAAGAGAGGCCTGGTGTTCCAATTACTAAGAGGAACCGACTCAACATTATGGATTGGCTATCATTTCGTATTCAAATGAGAAAGTGTGAAGCTCAAACACTTCTTTGCTCAAGAAGACTTTTCCAACAATTTTTGGTTGATGGTTTTACAATGATGGAGGCGGAAAGATTATCTTTTGTCCGCAACAATCAGTCCACTTTGAGAGTCGGGAAATACCAAAAACTCAATGCTGCTACAGAATCACATCCTAAAAGTGGGAAAAGAGTGGTACTACCTTCAACATTCGTGGGAAGCAAGAGGTATATGGATCAATTGTATTTTGATGGTATGGCCATCTCTGCAGCAGTTGGATTTCCAGATTTGTTCATCACATTTACATGTAATCCAAATTGGCCCGAAATAAAAAGATTACTTGCAAGGCAAAATTTAAAAGCTCATGATCGCCCAGATATAATCTCAAGAgtgttcaaaatcaaattaaatgaGCTTTTAAAGGATCTTACCAAGAAACATGTTCTAGGCAAAGTCAGAGcatTTTTGTACACTATTGAATTCCAAAAGCGAGGCCTGCCACATGCACATATTCTACTTTTCCTCCATCCAGATAGCAAATATCCATCACCTGATGATATTAACCAAATCATTTCAGCTGAAATACCAAACCCTTCAACTCAACAGGAATTGTATATGTTGGTTAAAACACACATGATACATGGTCCTTGTGGAATCACATATAAGTCATCACCTTGCATGGGGGATGGTAAGTGTTCAAAATATTATCCAAAGAATTTTCAAGAGGCAACAATTGTTGATCAAGATGGATACCCTGTTTATAGGAGAAGAGTTAATGGTTACAATATTGAAAAATGTGGGGCAACGATGGATAATAGACACGTTGTGCCTTACAATCcatttttgttattgaaatatCAGGCTCACATTAATATGGAGTGGTGTAACCAATGTACTTCAATCAAGTATCTTTTCAAGTATATACACAAGGGTTTTGATCGCATCACAGCTGCTATTTCTAGGCCAAACAACAGGAAAAAAGATAACAATGAAGAAATTGATGAGGTCAAAGAATACATTGATTGTAGATATGTATCTCCAAGTGAAGCTTGCTGGAGGATTTTCTCCTTTGCTATCCATGGTCGGAAACCTGTTGTTGAGAGATTATTCTTTCATTTAGAAGGACAACATTCTGTGTTTTTTCAAGATTATGAAAGAATAGATGATGTTCTTCTTAAACCAAGTGTCACTGAGTCCATGTTTTCAGCATGGTTTGAAGCAAACAAGTTGTATCCACAAGGAAGGGATTTGACATATGGCCAATTTGTTTCAAAGTTTGTATATGTCAAGAAAAAAAGACATTGGAAACCAAGAAAAAGAGGATATACAATCGAAAGATTAATATGGGTCCCACCAAGTACCGGAGAGCTGTATTATTTAAGAATGATGTTGACTGTTATAAGAGGACCAACTTGCTATGATGACCTCCGTAAAATTGGTGATACTCAATATTTTAGCTACCGAGATGCTTGCTTTGCCATGGGGTTTCTTGAAGATGATCGAGAATACATCAATGCTATCAAGGAAGCTAAAGATTGGGGATCCGGACATTTTTTAAGAAAGCTTTTCGTCATCATGCTACTCGCTAATACCATGAATCGTCCTAGGCATGTTTGGGACGAATCCAAAGTATGGCTCTCTGATGGTATTTTGCATCGCCAACGCATCATTGCAAAAAATAGAGTCCTACAATTAACAGATGCACAGATTGATAACTTAACTCTAATTGAGATCGAGAAATTATTACAGGCCAATAGGAAAAGTTTGACAGATTTCCCGTGTATTCCCTACCCAAACCATTATGTTACAGCTGAATTGGGGAATAGACTCATATATGAAGAAATGAATTACGATGTCCAACAACAAAAAGATGAATTTGCTTCTTTGTTCAATGCACTCACAGATGAACAAAGAGGAATTTATGATACTATTATGAAGGCAGTTAGAAAGCAAAAAGGGGGTGTTTTTTTCTTACATGGTTATGGAGGAACTGGTAAAACTTTCATGTGGAGGACACTAGCTTCCTCACTAAGATCAAAATCACAAATTGTTGTCACTGTAGCTTCAAGTGGCATAGCATCCCTTTTGCTACCCGGTGGTAGAACTGCGCATTCGAGGTTTAAAATTCCAGTCCCAACATTGGATAATGCTACATGTGAGATTGAACACAATGATGAACATGCTGGCCTTCTTAAACAAACCAAGTTAATCATCTGGGATGAAGCTCCAATGGCACACCGATACACTTTTGAGGCTCTGGAAAGGACTTTGAGAGATGTTATGAGTTCATACAAAAATTCTAACACTATCTTTGGAGGTAAGGTCATTGTATTTGGTGCAGATTTCAGACAAATTCTACCTGTCGTTCCTAGAGGCACCCAAGGAAAACTAGCTGTCCCAAATGATGGTTATGCAGAAATTGAAATCCCGAAAGAACTCTTGATCCTTGATTATGATGATCCAATTCATGCCATAGTTGATAGTACTTACCCCAACTTGGTCGATCATTACAAGTCCCAACAATTTCTGCACTCCAGAGCAATACTGGCCTCAACAATTGAAGTCGTCGAACAGATAAATTCCTATGTTCTCACTAAGATTCCAgGTGAATCCAAAGATTTTTTTAGCTATGACTCCATAGATCGCTCGGATGTAAATGATTGTGAGATTTTCGAAACACTAACACCTGAGTTTCTTAATTCTCTCCGAACATCTGGTCTACCAAATcacaaaataactttgaaaattGGAACTCCAATTATGCTTATGAGGAATCTTGATCAAGTTGAAGGATTGTGTAATGGTACTAGACTGATAGTAACCAAACTTGCAAATCATGTTATTGAGGCGAAGATCATAAGTGGCAAATACATTGGTAATGTTCTTTTTATTCCTCGGATGAAGATGTCACCTTCTCAATCACCATGGCCATTCAAACTGAACCGAATTCAATTCCCAATTATCGTTTCATATGCAATGACTATTAATAAATCACAAGGGCAATCGTTGGACAATGTTGGTTTATACTTGCCTAAAGATGTTTTCAGTCATGGTCAATTGTATGTGGCAATGTCGAGGGTTACCACAAAAGAAGGTTTAAAGATATTGATACATGATAAAGAAAAGAAAGCCAACAATATCTTATCAACTACTACTACTAATGTAGTTTTTAAGGAAGTTTTTGGTAATCTTTGA 6471 0.38 METERAKVPKTNMESGKTKSMKSASSEQPKPDKSEDKQTEQNKIIVQPDNKEYDPVKIVNKKKEIWRLGVILDDMWTVSKGETDVSLELLIRDIKGNTIQASILENDIDQWKPKLIEGNTYYMHNFRVHDNDTGFKMTTHKYRLTFVGATRVNVADIPGIPRTLFNFKDFAEILAGKFEPDFLVDVIGVVDSMKKCVTATNTKKGNAAFTLKDFRENVLDCTLWDGLSAEFLNFYNQQTENGPLVMIIKHARVKEPQGVYPLQVTNVWNGTKLLFDRNIPEIKDFFNSLPNDRVYPARSLGAASSQGWNSQTSGGSQFNSDEDFMKQARVIRLGDMKKLKSETFCVTVVTTSHIKVSNQGWFFRACTDCSCKAEGIAPPYTCRKEHKSYNPTIKYKLDVEVYDGDDTAKFIFWDNTLHELLGMTAATLLEKQLQIGLGDPQEYPNCIDDIMERKLAFRVKWQPGWGGQASVLLCKDCNDLVAKIEEQLPVAESSSKDIQPIQEDVVAILDSPPIQRFTQTDIDKFASLDDSILSTPNISASAENDLSTSSQKTPAKRSATKPINVDSTNPDSQFSATRSGKLIKKEKINTSSGKENSDIAHPKHLHQCLERSTTIKARAATSENASPVGTIQKISFQSTPVINQQSNVRTSHTPISSTRKNTPLSDITSSFRNQQNTKFVGSGNSSNAKLKSKQTLQAKSRPLKHNFTVNLANKFDAVNTVATNIDHVEIATEVTNQHSLSTVKRKHVQSDVVAPEVASNSDSSTSSEEDNFEDETDSDTDNDDLNGITSATNSISLQGYSDIGDPLCECEACGAQMWYQERRQKARHCANPTFQMCCANSKVQLPLLNQPPGCLQELLFDRNSKEALHFQQNIRMYNAMFSFTSPGMKFDKRFNRGRGPPNIRLHGQPCHRMGSMLPNDGVPPKFAQLYIYDTDNEVANRINSCGNNKSIDAHIVIRLGQMLDQHNVHAKAFRMARDRLHNEDVKELKLILIHDRKTDARIYNKPTVSEVAALIVGDVDAGDTRDIIIQEKGGKLERINEFHPAYLGYQYPLLFPYGEDGFRRGTLHKERPGVPITKRNRLNIMDWLSFRIQMRKCEAQTLLCSRRLFQQFLVDGFTMMEAERLSFVRNNQSTLRVGKYQKLNAATESHPKSGKRVVLPSTFVGSKRYMDQLYFDGMAISAAVGFPDLFITFTCNPNWPEIKRLLARQNLKAHDRPDIISRVFKIKLNELLKDLTKKHVLGKVRAFLYTIEFQKRGLPHAHILLFLHPDSKYPSPDDINQIISAEIPNPSTQQELYMLVKTHMIHGPCGITYKSSPCMGDGKCSKYYPKNFQEATIVDQDGYPVYRRRVNGYNIEKCGATMDNRHVVPYNPFLLLKYQAHINMEWCNQCTSIKYLFKYIHKGFDRITAAISRPNNRKKDNNEEIDEVKEYIDCRYVSPSEACWRIFSFAIHGRKPVVERLFFHLEGQHSVFFQDYERIDDVLLKPSVTESMFSAWFEANKLYPQGRDLTYGQFVSKFVYVKKKRHWKPRKRGYTIERLIWVPPSTGELYYLRMMLTVIRGPTCYDDLRKIGDTQYFSYRDACFAMGFLEDDREYINAIKEAKDWGSGHFLRKLFVIMLLANTMNRPRHVWDESKVWLSDGILHRQRIIAKNRVLQLTDAQIDNLTLIEIEKLLQANRKSLTDFPCIPYPNHYVTAELGNRLIYEEMNYDVQQQKDEFASLFNALTDEQRGIYDTIMKAVRKQKGGVFFLHGYGGTGKTFMWRTLASSLRSKSQIVVTVASSGIASLLLPGGRTAHSRFKIPVPTLDNATCEIEHNDEHAGLLKQTKLIIWDEAPMAHRYTFEALERTLRDVMSSYKNSNTIFGGKVIVFGADFRQILPVVPRGTQGKLAVPNDGYAEIEIPKELLILDYDDPIHAIVDSTYPNLVDHYKSQQFLHSRAILASTIEVVEQINSYVLTKIPGESKDFFSYDSIDRSDVNDCEIFETLTPEFLNSLRTSGLPNHKITLKIGTPIMLMRNLDQVEGLCNGTRLIVTKLANHVIEAKIISGKYIGNVLFIPRMKMSPSQSPWPFKLNRIQFPIIVSYAMTINKSQGQSLDNVGLYLPKDVFSHGQLYVAMSRVTTKEGLKILIHDKEKKANNILSTTTTNVVFKEVFGNL 2156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01491 2156 MobiDBLite consensus disorder prediction 739 789 - -
Tsu02g01491 2156 PANTHER UNCHARACTERIZED 1898 2109 - -
Tsu02g01491 2156 PANTHER UNCHARACTERIZED 961 1890 - -
Tsu02g01491 2156 MobiDBLite consensus disorder prediction 580 599 - -
Tsu02g01491 2156 Gene3D - 306 487 IPR012340 -
Tsu02g01491 2156 Gene3D - 1721 1894 IPR027417 -
Tsu02g01491 2156 MobiDBLite consensus disorder prediction 1 48 - -
Tsu02g01491 2156 CDD RPA1_DBD_C 338 460 IPR013955 -
Tsu02g01491 2156 CDD RPA1_DBD_A_like 67 152 - -
Tsu02g01491 2156 MobiDBLite consensus disorder prediction 644 667 - -
Tsu02g01491 2156 Pfam Helitron helicase-like domain at N-terminus 1087 1265 IPR025476 -
Tsu02g01491 2156 CDD SF1_C_RecD 2071 2125 - -
Tsu02g01491 2156 SUPERFAMILY Nucleic acid-binding proteins 165 294 IPR012340 -
Tsu02g01491 2156 SUPERFAMILY Nucleic acid-binding proteins 341 462 IPR012340 -
Tsu02g01491 2156 PANTHER ATP-DEPENDENT DNA HELICASE 1898 2109 - -
Tsu02g01491 2156 PANTHER ATP-DEPENDENT DNA HELICASE 961 1890 - -
Tsu02g01491 2156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1856 2139 IPR027417 -
Tsu02g01491 2156 Pfam Domain of unknown function DUF223 88 176 IPR003871 -
Tsu02g01491 2156 Gene3D - 159 294 IPR012340 -
Tsu02g01491 2156 MobiDBLite consensus disorder prediction 26 42 - -
Tsu02g01491 2156 Gene3D - 2071 2123 IPR027417 -
Tsu02g01491 2156 MobiDBLite consensus disorder prediction 539 579 - -
Tsu02g01491 2156 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1488 1880 IPR027417 -
Tsu02g01491 2156 MobiDBLite consensus disorder prediction 539 599 - -
Tsu02g01491 2156 MobiDBLite consensus disorder prediction 767 782 - -
Tsu02g01491 2156 CDD RPA1_DBD_B_like 185 285 - -
Tsu02g01491 2156 Pfam PIF1-like helicase 1725 1886 IPR010285 GO:0000723|GO:0003678|GO:0006281
Tsu02g01491 2156 SUPERFAMILY Nucleic acid-binding proteins 62 154 IPR012340 -
Tsu02g01491 2156 Gene3D - 51 154 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01491 Tsu-Chr2 13187094 13199279 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01491 91 459 Core DNA Replication Machinery Family AT5G08020 23.575 2.14e-09 60.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01491 - K05758 vun:114163467 1659.81