Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01481 ATGGATACTTTTGGTGTTGCTCATTCTAACTTGCATAAGAGAAAGTCTACCTTGATTGCTGATGGGAATCATGCTGCGTTTAAGAAGACATCAAGGAAGGGAAGCTATGTAGACACTCTTGAACGAAAGGCAGAAGATATCTTTACTAGAGAAGAACAATACAATGAGGATGAGGATAACAATAACAATGACGCCGATGACAATAATGGTGAAGAAAAAGctggagatgatgatgatgtggtTGATGATCAAGAAGAGGAAGGAGAGTACTTACTAGGAGACGAGGGTCCTACTACAGTTACAGAGGACGGAATTGATCACAAAGGTCTGTTCACGAAAGACGCGGATGACGAAAATAAAACTTCTACTCGACATTTCAGCCATGGATGTCACTTAATGGAAGGAGAGGTGAACCATGGAATGGAGGATTATGTTTTTGCTCAACACAGGAAGCTAAATGGTCACGACTTAGGACTCTACGCAATATTTGATGGACACGCAGGTCGCGATGTTGCCAAATATTTGCAAAGCcgtctttttgaaaatatactGAGTGAGCCCGATTTCTGGGGAAATCCGGTGCATGCTGTTAAGAAAGCATGTAAAGCTACGGATGATGAGATTCTAGAAAACATAGCCAATTCGCGCGGAGGATCAACGGCTGTGGCAGCAATACTAATTAATGGAGTAAAGCTACTGGTAATCAATGTTGGTGATTCACGAGCAATATCGTGTAAAACTGGTCTTGCGAAACAACTTACCGTGGATCACGAACCGGAGAAGGAAAAGGATTTGGTTGAGAGCAGAGGAGGTTTTGTGTCTAAAAGACCAGGGAATGTTCCAAGAGTGGATGACCAGTTAGCAATGACAAGATCATTTGGAGATGGAAAACTGAAGGAACACATCACTGCAGAACCAGATGTGATGATTAAGAAGATTGATGAGGACACTGAATTCATCATTTTGGCAAGTGATGGTCTTTGGAAGGTGATGACAAATCAAGAGGCTTGTGATTGTATCAAGAATGTTGATGATCCTCAAAAAGCAGCAAAAAAGTTAGTGACAGAAGCAAAACACAAGGGAAGCTACGATGATATTTCATGCATAGTTGTTATGTTCTAG 1122 0.4002 MDTFGVAHSNLHKRKSTLIADGNHAAFKKTSRKGSYVDTLERKAEDIFTREEQYNEDEDNNNNDADDNNGEEKAGDDDDVVDDQEEEGEYLLGDEGPTTVTEDGIDHKGLFTKDADDENKTSTRHFSHGCHLMEGEVNHGMEDYVFAQHRKLNGHDLGLYAIFDGHAGRDVAKYLQSRLFENILSEPDFWGNPVHAVKKACKATDDEILENIANSRGGSTAVAAILINGVKLLVINVGDSRAISCKTGLAKQLTVDHEPEKEKDLVESRGGFVSKRPGNVPRVDDQLAMTRSFGDGKLKEHITAEPDVMIKKIDEDTEFIILASDGLWKVMTNQEACDCIKNVDDPQKAAKKLVTEAKHKGSYDDISCIVVMF 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01481 373 ProSitePatterns PPM-type phosphatase domain signature. 159 167 IPR000222 GO:0043169
Tsu02g01481 373 Coils Coil 37 57 - -
Tsu02g01481 373 SUPERFAMILY PP2C-like 124 373 IPR036457 -
Tsu02g01481 373 SMART PP2C_4 117 371 IPR001932 -
Tsu02g01481 373 ProSiteProfiles PPM-type phosphatase domain profile. 127 373 IPR001932 -
Tsu02g01481 373 CDD PP2Cc 126 371 IPR001932 -
Tsu02g01481 373 PANTHER PROTEIN PHOSPHATASE 2C 28-RELATED 77 373 - -
Tsu02g01481 373 Pfam Protein phosphatase 2C 138 366 IPR001932 -
Tsu02g01481 373 MobiDBLite consensus disorder prediction 57 92 - -
Tsu02g01481 373 PANTHER ALPHABET, ISOFORM E-RELATED 77 373 - -
Tsu02g01481 373 MobiDBLite consensus disorder prediction 100 123 - -
Tsu02g01481 373 MobiDBLite consensus disorder prediction 50 123 - -
Tsu02g01481 373 Gene3D - 122 373 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01481 Tsu-Chr2 13082849 13086246 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01481 124 373 PP2C-type Phosphatase Gene Family AT4G28400 57.769 7.47e-103 302
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01481 - - gmx:100814772 526.554
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01481 02 13082849 13086246 Tsu02g01481 02 13082849 13086246 ECH