Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01460 ATGGCGAAAAAGGCTAAACCCTCTCAGAAGAAGAACGCTGCTTCTCCAGCCTCCACCTCCACTTCCTCAAGTAAACTAGTGTTGAAGATTAAATCAAATGAAGGAATGAAGAGATCGTTGCGGCAGACTAAGTCAAGAGAGATGACCAAagcaaaacagaaaaagaacaaacagaagattGATGCTAAGAAGCCAAAGAAACCACCCACTGCTTTCTTCTACTTCTTGGAGGATTTTCGGAAAGAGTTTCAAGATCAGAATCCAGATGTAAAGTCAATGCGTGATATTGGCAAGGCATGTGGAGATAAATGGAAAACAATGAATTATGAGGAGAAGGTTAAATACTACGATATAGCAACAGAAAAACGTGCAGAATTTGATAGAGCAATGACagaatataaaaagaaaatgGAAAATGGCGATTTTGAAGAAACTGACGAGGAGTCAGAATATGACGAGTAA 462 0.3615 MAKKAKPSQKKNAASPASTSTSSSKLVLKIKSNEGMKRSLRQTKSREMTKAKQKKNKQKIDAKKPKKPPTAFFYFLEDFRKEFQDQNPDVKSMRDIGKACGDKWKTMNYEEKVKYYDIATEKRAEFDRAMTEYKKKMENGDFEETDEESEYDE 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01460 153 MobiDBLite consensus disorder prediction 31 49 - -
Tsu02g01460 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 14 1 152 - -
Tsu02g01460 153 SUPERFAMILY HMG-box 51 142 IPR036910 -
Tsu02g01460 153 MobiDBLite consensus disorder prediction 11 29 - -
Tsu02g01460 153 Pfam HMG (high mobility group) box 65 134 IPR009071 -
Tsu02g01460 153 PANTHER HIGH MOBILITY GROUP B PROTEIN 12-RELATED 1 152 - -
Tsu02g01460 153 Gene3D High mobility group box domain 60 149 IPR036910 -
Tsu02g01460 153 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 65 134 IPR009071 -
Tsu02g01460 153 CDD HMGB-UBF_HMG-box 65 130 - -
Tsu02g01460 153 SMART hmgende2 64 135 IPR009071 -
Tsu02g01460 153 MobiDBLite consensus disorder prediction 1 66 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01460 Tsu-Chr2 12761036 12764084 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Tsu02g01460 HMG_box 1.9e-18 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01460 - - gmx:100809401 176.022