Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01457 ATGGGTCGTAGAAAAATAGAGATGAAATATGTGAAAGACAAGGATGCAAGGTATGTAGCATTTTCAAAGAGAAAGAATGGTCTTTTCAAGAAAGCAAGTCAATTATCAACTCTTTGTAATGCTAGAGTTGGTGTgtttggattcactcctggTGGTAAACCATTTGCTTTTGGTTCTCCAACTTTTCAAGCTGTGGCTGATGAGTACCTTCATGAAAGACAAGGTGAATCATCAAACCAAAATGTTGAGAATTCTGAAAATGGAAATCTCATCAATCTCAATGAACAACTTATGGATGTGACCAAAGAGCTAAAGGAGGTGAAAATTACAAACGACAAAAAGGGTAAAGTCCCAAATGTTGCCCTTGATGGTCTTGATTTTGAGGAGCTTCAAAAAGTGAAAGCTAGATTGAAAGAGTTCCATGGTGACATTGAGGCAGCATCATCTATGCTTCTCCTTGCAAAGGAACCTAGATGA 477 0.3606 MGRRKIEMKYVKDKDARYVAFSKRKNGLFKKASQLSTLCNARVGVFGFTPGGKPFAFGSPTFQAVADEYLHERQGESSNQNVENSENGNLINLNEQLMDVTKELKEVKITNDKKGKVPNVALDGLDFEELQKVKARLKEFHGDIEAASSMLLLAKEPR 158
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01457 158 SUPERFAMILY SRF-like 2 79 IPR036879 GO:0003677|GO:0046983
Tsu02g01457 158 Gene3D - 13 92 IPR036879 GO:0003677|GO:0046983
Tsu02g01457 158 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Tsu02g01457 158 PANTHER AGAMOUS-LIKE MADS-BOX PROTEIN AGL29 2 157 - -
Tsu02g01457 158 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Tsu02g01457 158 Coils Coil 90 110 - -
Tsu02g01457 158 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 11 57 IPR002100 GO:0003677|GO:0046983
Tsu02g01457 158 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Tsu02g01457 158 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Tsu02g01457 158 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Tsu02g01457 158 PANTHER MADS BOX PROTEIN 2 157 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01457 Tsu-Chr2 12727086 12727562 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01457 1 155 Type I MADS-box Gene Family AT2G34440 38.953 5.17e-32 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Tsu02g01457 SRF-TF 3.7e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01457 - - mtr:MTR_4g094638 179.104