Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01452 ATGGATTTGAGCGAAGAAGTTAGACAAGCTCACAAGCGAGAATTCGCCGATTTCCTCGATCAAGATATCGGAAAAGGCATATACATGGACGAAATCAAAGCTCTAATCAACCACAAACGCCACCGCCTCATTGTCAACATCTCCGATCTCCACAACTTCCGCGACTTGGGTAACAGAATTCTGAGAAATCCAAGTGAGTATATGCAATCGTTCTGTGATGCGGTAACCGATGCTGCTCGTGCTATTGATCCTAAGTATTTGAAGGAAGGGGAACAAGTTCTTGTGGGTTTTGAAGGTCCTTTTGTTTCTCGCCGAGTTACGCCGAGGGATCTTCTTTCTGAATTCATAGGTTCTATGGTCTGTGTTGAGGGGATTATCACCAAATgTTCTCTTGTAAGGCCAAAGGTTGttaaaagtgttcatttttgCCCCACCACTGGCAACTTCACTAGCCGTGATTATCGAGATATTACATCTAATTTGGGTTTGCCCACAGGGTCTGTTTATCCCACAAGGGATGAACACGGAAATTTACTTGTGACCGAGTATGGATTGTGCAAATACAAGGATCATCAAACCTTGTCCATGCAAGAAGTTCCTGAAAATTCTGCGCCTGGTCAGCTCCCAAGAACAGTGGATGTCATAGCAGAGGATGATCTTGTTGATTCTTGCAAGCCTGGAGATCGTGTGGCTATTGTCGGGATATATAAGGCTCTTCCAGGAAAAAGCAAAGGCAGTGTGAATGGTGTATTCAGGACTGTGCTCATAGCCAATAATGTATCTCTTCTCAACAAAGAGGCTAATGCTCCAATCTACAGCCCTGAAGAccttaaaaacattaaaaagatAGCTGAAAGAGATGATACATTTGATCTTCTTGGTAATTCACTTGCACCTTCTATACATGGACATTCTTGGATAAAGAAAGCAGTGATGTTATTGATGCTCGGTGGAGTGGAGAAGAACTTAAAGAATGGCACTCATTTAAGAGGTGACATTAACATGATGATGGTTGGTGATCCATCTGTTGCCAAGTCTCAACTCTTGAGAGCAATCATGAATATTGCTCCCTTGGCAATATCAACTACAGGTCGGGGTTCTTCAGGTGTTGGTTTGACAGCAGCAGTTACTTCAGATCAAGAAACAGGAGAAAGAAGGCTAGAAGCTGGGGCAATGGTTCTTGCTGACAGAGGTGTTGTCTGCATTGATGAATTTGACAAAATGAATGACCAAGATCGTGTAGCTATACATGAAGTTATGGAACAGCAGACTGTAACTATTGCTAAAGCTGGGATCCATGCATCACTTAATGCTCGTTGCAGTGTGGTGGCAGCTGCAAATCCCATATATGGAACTTATGATCGTTCACTTActccaactaaaaatattggGCTCCCAGACTCTTTGCTATCCCGGTTTGATCTCTTGTTTATCGTGTTGGATCAAATGGATCCTGATATTGATCGCCAAATATCAGAGCACGTCCTTCGTATGCATCGATTTCGTTCTGCTATTGATGGAGGTGAGGCAGCACATGATGGGAGTGCACGATATGGAAGAGAAGAGGAAGCTGATACTGAATCATCTGTCTTTGTCAAATATAACAGAATGCTACATGGAAAGAAAACTGATAGAGGTCGCAAACGCGACACACTTACAATTAAGTTTCTTAAAAAGTACATCCATTATGCTAAGCATAGGATTCAACCTGACCTGACTGATGAGGCATCTGACCAGATTGCCACAGCATATGCTGAGCTCAGAAATGCAAATTCAAATGCAAAGACCGGGGGAACACTTCCAATAACGGCCAGAACCTTAGAAACCATAATACGTCTCTCAACTGCTCATGCCAAATTGAAGTTGAGCAGAAAGGTTTCAAAGTCTGATGTTGATGCTGCTTTGAAGATTCTTAACTTTGCAATATATCATACAGAACTGACAGAAATGGATGAGCGTGAAGAAGAGAGGGAAAGAGAACTGGAGAGGAAGCGCAAGGCTGACAATGAAAATCACGGTCCTGATCGTGGTTCTAGAAGTAGAAGAGAtagCTCAACATCAGATGCCATGGAAGTTGACGATGCCTCAGCTGCCCCCCAACCTGCTGTCGGTCTCACTCCTGAAAGAATCGAAGCATTCAATACCCTATTTGGTCAGCATATGCGCGCCAATCGCTTGGATCTCATATCTATTACAGACATAGAGGATGTTATCAACAGAGGGGCTGGTTCCACTTACAGCTCGGCAGATATATTGCTCCTGTTAGAGaaaTTGCAAGAAGACAATAGATTGATGATAGTTGATGGAATGGTGCATATGGTATCATAA 2328 0.4214 MDLSEEVRQAHKREFADFLDQDIGKGIYMDEIKALINHKRHRLIVNISDLHNFRDLGNRILRNPSEYMQSFCDAVTDAARAIDPKYLKEGEQVLVGFEGPFVSRRVTPRDLLSEFIGSMVCVEGIITKCSLVRPKVVKSVHFCPTTGNFTSRDYRDITSNLGLPTGSVYPTRDEHGNLLVTEYGLCKYKDHQTLSMQEVPENSAPGQLPRTVDVIAEDDLVDSCKPGDRVAIVGIYKALPGKSKGSVNGVFRTVLIANNVSLLNKEANAPIYSPEDLKNIKKIAERDDTFDLLGNSLAPSIHGHSWIKKAVMLLMLGGVEKNLKNGTHLRGDINMMMVGDPSVAKSQLLRAIMNIAPLAISTTGRGSSGVGLTAAVTSDQETGERRLEAGAMVLADRGVVCIDEFDKMNDQDRVAIHEVMEQQTVTIAKAGIHASLNARCSVVAAANPIYGTYDRSLTPTKNIGLPDSLLSRFDLLFIVLDQMDPDIDRQISEHVLRMHRFRSAIDGGEAAHDGSARYGREEEADTESSVFVKYNRMLHGKKTDRGRKRDTLTIKFLKKYIHYAKHRIQPDLTDEASDQIATAYAELRNANSNAKTGGTLPITARTLETIIRLSTAHAKLKLSRKVSKSDVDAALKILNFAIYHTELTEMDEREEERERELERKRKADNENHGPDRGSRSRRDSSTSDAMEVDDASAAPQPAVGLTPERIEAFNTLFGQHMRANRLDLISITDIEDVINRGAGSTYSSADILLLLEKLQEDNRLMIVDGMVHMVS 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01452 775 SMART AAA_5 331 484 IPR003593 -
Tsu02g01452 775 Pfam MCM AAA-lid domain 556 639 IPR041562 -
Tsu02g01452 775 PANTHER DNA HELICASE 3 767 - -
Tsu02g01452 775 Gene3D - 135 189 - -
Tsu02g01452 775 Gene3D - 3 99 - -
Tsu02g01452 775 Gene3D - 271 664 IPR027417 -
Tsu02g01452 775 PANTHER DNA REPLICATION LICENSING FACTOR MCM FAMILY MEMBER 3 767 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 491 501 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 181 195 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 207 219 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 458 468 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein 3 signature 630 645 IPR008046 GO:0003677|GO:0005524|GO:0006270|GO:0042555
Tsu02g01452 775 Gene3D - 109 239 IPR012340 -
Tsu02g01452 775 ProSiteProfiles MCM family domain profile. 289 495 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 Coils Coil 644 671 - -
Tsu02g01452 775 MobiDBLite consensus disorder prediction 649 705 - -
Tsu02g01452 775 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 299 645 IPR027417 -
Tsu02g01452 775 ProSitePatterns MCM family signature. 398 406 IPR018525 GO:0003677|GO:0005524|GO:0006260
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein family signature 442 454 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein family signature 418 431 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein family signature 469 477 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein family signature 330 345 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 PRINTS Mini-chromosome maintenance (MCM) protein family signature 390 404 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 SUPERFAMILY Nucleic acid-binding proteins 13 259 IPR012340 -
Tsu02g01452 775 Pfam MCM P-loop domain 277 499 IPR001208 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 SMART mcm 104 643 IPR031327 GO:0003677|GO:0005524|GO:0032508
Tsu02g01452 775 CDD MCM3 292 641 - -
Tsu02g01452 775 Pfam MCM OB domain 109 239 IPR033762 -
Tsu02g01452 775 Pfam MCM N-terminal domain 12 83 IPR027925 -
Tsu02g01452 775 MobiDBLite consensus disorder prediction 649 689 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01452 Tsu-Chr2 12675006 12680845 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01452 1 575 Core DNA Replication Machinery Family AT5G46280 82.842 0.0 982
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01452 K02541 - gmx:100811545 1314.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01452 02 12675006 12680845 Tsu02g01452 02 12675006 12680845 ECH