Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01442 atggCCGACGATGAACCAATGCCTACTCGCTGGTCTTTCCAgGAGTTCAAAACTTATTATGATGTTAGGCTTGGTAGGAAGAGATTGGTAGAGAAGAATGGTGAGACTGCTAATAATGTAGTCAGCAATGGAAATTCTTCCGGCATTGCGTCAAATGGCAATTTTCATGGTAAAAAAACAACGGATAAAGCTATTTATGAGCAGTTCCAAAGCCAGGGGCAGAATCCGACGCACACAAATGGTTTTGCACAAAACAATGTTGATGAAACACCGCAGAAGTCTTTGCTTCCACCTTTTGAATCGGCAGAAATGCGTACTTTAGCAGAGAGCTTAAGTAGGGATATAATTCGTGGGAGTCCAGATGTGAAGTGGGAAAGCATCAAGGGGTTAGAGAATGCCAAACGTCTACTGAAAGAAGCTGTAGTGATGCCGATTAAGTATCCCAAGTACTTTACTGGTCTGTTATCACCATGGAAGGGCATTCTCCTTTTTGGCCCCCCAGGGACAGGAAAGACCATGCTTGCAAAGGCAGTTGCAACAGAGTGCAACactacattttttaatatttcagcATCGTCTGTTGTCAGCAAATGGCGAGGTGATTCAGAAAAGTTAATAAAGGTGTTATTTGAGCTTGCAAGGCATCATGCACCTGCAACAATATTTCTGGATGAAATTGATGCAATCATCAGTCAACGTGGTGAGGCACGCAGTGAACATGAAGCAAGTAGACGGTTAAAAACTGAACTACTCATTCAGATGGATGGTTTAACGCGGACAGaagaacttgtttttgttttggcgGCGACAAATCTTCCGTGGGAATTGGATGCAGCCATGCTTAGACGTCTTGAGAAGCGAATCCTTGTACCACTTCCAGAACCAGAAGCAAGAAGAGCAATGTTTGAGGAACTCCTTCCTCCGCAGACTGATGAGGAACCGATCCCCTATGATTTACTTGTGGATCGGACAGAAGGATATTCAGGCTCGGATCTCCGCCTGCTTTGTAAAGAAACTGCAATGCAGCCATTGAGACGCTTAATGTTACAACTCGAACAGGAACAAGATGTGGTGCCTGAAGAAGAGTTGCCAAAAGTTGGGCCAGTCAGGCCTGAAGATGTAGAGACAGCTTTAAGGAACACACGGCCATCTGCTCATCTCCATGCCCACAAATACGACAAGTTTAACGCCGATTATGGTAGTCAAATACTTCAATGA 1218 0.4294 MADDEPMPTRWSFQEFKTYYDVRLGRKRLVEKNGETANNVVSNGNSSGIASNGNFHGKKTTDKAIYEQFQSQGQNPTHTNGFAQNNVDETPQKSLLPPFESAEMRTLAESLSRDIIRGSPDVKWESIKGLENAKRLLKEAVVMPIKYPKYFTGLLSPWKGILLFGPPGTGKTMLAKAVATECNTTFFNISASSVVSKWRGDSEKLIKVLFELARHHAPATIFLDEIDAIISQRGEARSEHEASRRLKTELLIQMDGLTRTEELVFVLAATNLPWELDAAMLRRLEKRILVPLPEPEARRAMFEELLPPQTDEEPIPYDLLVDRTEGYSGSDLRLLCKETAMQPLRRLMLQLEQEQDVVPEEELPKVGPVRPEDVETALRNTRPSAHLHAHKYDKFNADYGSQILQ 405
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01442 405 SMART AAA_5 157 294 IPR003593 -
Tsu02g01442 405 PANTHER AAA DOMAIN-CONTAINING 10 403 - -
Tsu02g01442 405 Pfam AAA+ lid domain 318 354 IPR041569 -
Tsu02g01442 405 Gene3D - 120 395 IPR027417 -
Tsu02g01442 405 PANTHER KATANIN P60 ATPASE-CONTAINING SUBUNIT A-LIKE 2 ISOFORM X1 10 403 - -
Tsu02g01442 405 CDD AAA 128 292 - -
Tsu02g01442 405 Pfam ATPase family associated with various cellular activities (AAA) 161 291 IPR003959 GO:0005524|GO:0016887
Tsu02g01442 405 Gene3D - 293 381 - -
Tsu02g01442 405 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 120 385 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01442 Tsu-Chr2 12573685 12580191 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01442 155 364 Calmodulin-binding Proteins AT3G56690 36.620 1.58e-31 125
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01442 K07767 - gmx:100794098 669.077
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01442 02 12573685 12580191 Tsu02g01442 02 12573685 12580191 ECH