Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01424 ATGACGCTTCCACCAAACAAGATAGAGAGTCTTCCTGCAATGGTTGCTGATGTCTGTTCCAACGATGCTAGTGCGCAATTGAAAGCCACCACGCTGTTTCGAGAGATACTTATAAAAGAAGAGCGAAACCTGCAGATTGAAGAGATTATTCAATCCGGTGTTGTGCCACGTTTTGTTGAGTTTATTGTTAGGGAGGACATGCCTGAACTTCAGATTGAAGCTGCATGGGCTTTGACAAACCTAGCATCTGGAACTTCTGAGAATACTAAGGTTGTGATTGATCATGGAGCAGTTCCTCAATTTGTTGCGTTGCTCAATTCACCTAATAATGAAGTTCGAGACCAGGCAGTGTGGGCTTTGGGAAATATTGCTGCTGACTCCCCCGAGTGTCGTGATCTAGTGCTTGGCCATGGTGCCCTTGCCTCACTATTGCCCATATTGGAGGAGCACAATAAGggGAATCAAACAAACCTTGAAACTGTAATTTTGAGAAATGCCTCGTGGACTTTAGCAAACTTCTGCAGGGGAAATCCACAGCCTACATTTGAGATGGTGAGACCTGCGCTTCCAGTTCTTCGGCGTTTGATTTTGTCCAGGGATCAAGAAGTTTTGACAAATGCTTCTTGGGCTTTATCATACCTTTCTGATAGCACAAATGACAAAATCCAAGAAATTATTGAGGCAGATGTATACAACCGACTGGTGCAACTCCTTCACCACCCATCTGCTTCAGTGTTGATCCCTGCTGTTCGCACAGTGGGAAATATTGTGACTGGAGATGATATGCAGACTCAGttgATGATCAATCTTCGTGTACTCCCTTGCCTTTTGAGATTATTGACACACAATCATAAAAAAAGCATCAAGAAAGAAGCTTGTTGGACTATATCAAACATTACAGCGGGAACTAAGGAACAAATACAGGCTGTTATTGAAGCTGGTCTTGTTGCTCCGCTTGTTAGTCTTCTTCAAAGTGCAGAGtttgatattaaaaaagaaGCTGCATGGGCAATAACAAATGCCACATCTGGTGGAACTCATGAGCAGATCAAGTATTTGGTGGGTCAGGGTTGCATAAAACCACTATGTGATCTGCTTGTTTGCCCCGATTCAAGAATTATCACTGTCTGTTTGGAGGGTCTAGAGAATATTCTGAATGTTGGAGAAGCAGAGAAGAGCTTGGGTAACTCTGGACATTCCAACTTGTATGCTCAGATGATAGAGGATTCGGAGGGATTGGAGAAGATTGAAAACCTGCAGTATCATGAAGACGTTGAAATATATGAGAGGGCTGTCAAACTTCTTGAAACATTCTGGTTGGAAGATGAGAGATGA 1335 0.4262 MTLPPNKIESLPAMVADVCSNDASAQLKATTLFREILIKEERNLQIEEIIQSGVVPRFVEFIVREDMPELQIEAAWALTNLASGTSENTKVVIDHGAVPQFVALLNSPNNEVRDQAVWALGNIAADSPECRDLVLGHGALASLLPILEEHNKGNQTNLETVILRNASWTLANFCRGNPQPTFEMVRPALPVLRRLILSRDQEVLTNASWALSYLSDSTNDKIQEIIEADVYNRLVQLLHHPSASVLIPAVRTVGNIVTGDDMQTQLMINLRVLPCLLRLLTHNHKKSIKKEACWTISNITAGTKEQIQAVIEAGLVAPLVSLLQSAEFDIKKEAAWAITNATSGGTHEQIKYLVGQGCIKPLCDLLVCPDSRIITVCLEGLENILNVGEAEKSLGNSGHSNLYAQMIEDSEGLEKIENLQYHEDVEIYERAVKLLETFWLEDER 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01424 444 Pfam Atypical Arm repeat 401 443 IPR032413 -
Tsu02g01424 444 Gene3D - 9 440 IPR011989 -
Tsu02g01424 444 SUPERFAMILY ARM repeat 11 438 IPR016024 -
Tsu02g01424 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 271 314 IPR000225 GO:0005515
Tsu02g01424 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 314 342 IPR000225 GO:0005515
Tsu02g01424 444 PANTHER IMPORTIN SUBUNIT ALPHA 6 443 - -
Tsu02g01424 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 96 138 IPR000225 GO:0005515
Tsu02g01424 444 SMART arm_5 303 343 IPR000225 GO:0005515
Tsu02g01424 444 SMART arm_5 85 125 IPR000225 GO:0005515
Tsu02g01424 444 SMART arm_5 260 301 IPR000225 GO:0005515
Tsu02g01424 444 SMART arm_5 42 83 IPR000225 GO:0005515
Tsu02g01424 444 SMART arm_5 218 258 IPR000225 GO:0005515
Tsu02g01424 444 SMART arm_5 127 175 IPR000225 GO:0005515
Tsu02g01424 444 SMART arm_5 177 216 IPR000225 GO:0005515
Tsu02g01424 444 SMART arm_5 346 386 IPR000225 GO:0005515
Tsu02g01424 444 Pfam Armadillo/beta-catenin-like repeat 219 257 IPR000225 GO:0005515
Tsu02g01424 444 Pfam Armadillo/beta-catenin-like repeat 261 301 IPR000225 GO:0005515
Tsu02g01424 444 Pfam Armadillo/beta-catenin-like repeat 177 215 IPR000225 GO:0005515
Tsu02g01424 444 Pfam Armadillo/beta-catenin-like repeat 45 83 IPR000225 GO:0005515
Tsu02g01424 444 Pfam Armadillo/beta-catenin-like repeat 85 125 IPR000225 GO:0005515
Tsu02g01424 444 Pfam Armadillo/beta-catenin-like repeat 304 342 IPR000225 GO:0005515
Tsu02g01424 444 Pfam Armadillo/beta-catenin-like repeat 347 384 IPR000225 GO:0005515
Tsu02g01424 444 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 53 96 IPR000225 GO:0005515
Tsu02g01424 444 PIRSF Importin_alpha 5 444 IPR024931 GO:0005737|GO:0006606|GO:0061608
Tsu02g01424 444 PANTHER IMPORTIN ALPHA 6 443 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01424 Tsu-Chr2 12411038 12413828 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01424 68 335 U-box Gene Family AT3G46510 22.509 2.50e-06 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01424 K15042 - jre:108994832 654.44