Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01420 ATGGCGCCGAGCATTCAACTAACTTCCGCCGGCGCCGGCAACGACTCCGACTCCGGCGACCTTGAAGATGTCCGTCTATTAGATTCCTACGATAAACGCGATGTTGAAGACGGAACCAAACGGATTCAGGTTAGAATCACCGGTATGACGTGTGCGGCGTGTTCTAACTCCGTTGAAGCCGCTCTTAAGTCCGTCGACGGCGTAATTGAAGCCTCCGTCGCTTTACTTCAGAATAAAGCCGACGTCGTTTTCAATAAAAACCTCGTCAAgGATGAAGATATTAAGAATGCAATTGAAGATGCAGGTTTTGAAGCTGAGATCTTACATGAACAGGGTTCAGTTGGACCGAAACCGGTTGGTGATAGTACGGTGGTTGGACAGTTTACGATTGGCGGTATGACGTGTGCGGCGTGTGTGAATTCCGTTGAGGGAATTTTAAAGAATATAACCGGAGTGAAAAAGGCGGTGGTGGCTTTAGCTACTTCATTAGGTGAAGTTGAATTTGATCCAAAAGTGATTAGTAAAGAAGAAATTGTTGATGCAATTGAAGATGCTGGTTTTGAAGCTTCTTTTGTGCAGAGTACTAGTCAAGATGAGATTGTTTTAGgtgttgttggtgttgttgatgTTCAGGTTTTGGAGAGTATGTTAAGTGGTTTTAAAGGGGTGAGGCAGTTTCGGTTTGATCCTTTGTTGAGTgaacttaatgttgtttttgatCCTCAAGTTCTTAGTTCTAGATCATTGTTTGATGGGATTTGTGCAGTTAGTAATGGCATGTTTGAGTTGCACGTTAGAAGTCCTTATGCTAGAATGGCTTCTAAAGATGGATCAGATAGTGAAAATATGTTTCGACTTTTTACTTCCAGCTTGTTTCTTAGTattcctctctttttcatgggAGTAATATGTCCTCATATTCCATTCATATACTCTTTATTACTTTGGAGATGTGGGCCTTTCCTCATGGATGATTGGTTGAAGTGGGCATTGGTGAGTGTCATCCAATTTGTGATTGGAAAGCGCTTCTACGTAGCAGCTATCAGAGCTCTTAGAAATGGTTCAACAAACATGGATGTCCTGGTTGCTTTGGGAACTACAGCATCATATGTTTATTCTGTTTGTGCTCTTCTGTATGGTGCTCTTACTGGATTTTGGTCTACAACATACTTTGAAACAAGTGCTATGCTTATAACATTTGTATTGTTGGGCAAATATTTGGAATGTCTTGCCAAAGGAAAGACATCTGATGCCATTAAGAAGTTAGTAGAACTCACTCCTGCAACAGCTCTATTGGTTGTTAAAGACAAAGATGGTAAATCTattaaagaaagagaaatagatTCCCTGCTTATTCAACCTGGTGACACATTAAAAGTTCTTCCTGGTACAAAGATTCCCGCTGATGGTATTGTTAGCTGGGGCTCAAGTTACGTGAATGAGAGTATGGTGACTGGTGAAGCTATACCTGTTTTGAAGGAGATCAATGCATCTGTTATTGGAGGTACAATCAATTTCCATGGCGTCCTTCATATTCAAGCCACCAAAGTAGGATCTGATACAGTTTTGAGTCAGATAATTAATTTGGTGGAGACAGCCCAGATGTCCAAAGCTCCCATTCAAAAGTTTGCTGATTATGTAAGTATTCTGGCTGTGCTCTTTGATGGTTTTTGTGCTCTGTAA 1683 0.3945 MAPSIQLTSAGAGNDSDSGDLEDVRLLDSYDKRDVEDGTKRIQVRITGMTCAACSNSVEAALKSVDGVIEASVALLQNKADVVFNKNLVKDEDIKNAIEDAGFEAEILHEQGSVGPKPVGDSTVVGQFTIGGMTCAACVNSVEGILKNITGVKKAVVALATSLGEVEFDPKVISKEEIVDAIEDAGFEASFVQSTSQDEIVLGVVGVVDVQVLESMLSGFKGVRQFRFDPLLSELNVVFDPQVLSSRSLFDGICAVSNGMFELHVRSPYARMASKDGSDSENMFRLFTSSLFLSIPLFFMGVICPHIPFIYSLLLWRCGPFLMDDWLKWALVSVIQFVIGKRFYVAAIRALRNGSTNMDVLVALGTTASYVYSVCALLYGALTGFWSTTYFETSAMLITFVLLGKYLECLAKGKTSDAIKKLVELTPATALLVVKDKDGKSIKEREIDSLLIQPGDTLKVLPGTKIPADGIVSWGSSYVNESMVTGEAIPVLKEINASVIGGTINFHGVLHIQATKVGSDTVLSQIINLVETAQMSKAPIQKFADYVSILAVLFDGFCAL 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01420 560 ProSitePatterns Heavy-metal-associated domain. 130 159 IPR017969 GO:0046872
Tsu02g01420 560 PANTHER HEAVY METAL P-TYPE ATPASE 4 550 - -
Tsu02g01420 560 PANTHER ATP7, ISOFORM B 4 550 - -
Tsu02g01420 560 MobiDBLite consensus disorder prediction 1 15 - -
Tsu02g01420 560 Pfam Heavy-metal-associated domain 44 104 IPR006121 GO:0046872
Tsu02g01420 560 Pfam Heavy-metal-associated domain 128 188 IPR006121 GO:0046872
Tsu02g01420 560 SUPERFAMILY Calcium ATPase, transduction domain A 444 530 IPR008250 -
Tsu02g01420 560 ProSiteProfiles Heavy-metal-associated domain profile. 41 107 IPR006121 GO:0046872
Tsu02g01420 560 SUPERFAMILY HMA, heavy metal-associated domain 121 194 IPR036163 GO:0046872
Tsu02g01420 560 PRINTS Copper-transporting ATPase 1 signature 67 90 - -
Tsu02g01420 560 PRINTS Copper-transporting ATPase 1 signature 96 116 - -
Tsu02g01420 560 PRINTS Copper-transporting ATPase 1 signature 41 66 - -
Tsu02g01420 560 Gene3D - 39 111 - -
Tsu02g01420 560 MobiDBLite consensus disorder prediction 1 21 - -
Tsu02g01420 560 CDD HMA 43 106 IPR006121 GO:0046872
Tsu02g01420 560 ProSitePatterns Heavy-metal-associated domain. 46 76 IPR017969 GO:0046872
Tsu02g01420 560 TIGRFAM TIGR00003: copper ion binding protein 127 189 IPR006122 GO:0005507
Tsu02g01420 560 TIGRFAM TIGR00003: copper ion binding protein 42 105 IPR006122 GO:0005507
Tsu02g01420 560 Gene3D - 412 534 - -
Tsu02g01420 560 Gene3D - 126 191 - -
Tsu02g01420 560 SUPERFAMILY HMA, heavy metal-associated domain 36 110 IPR036163 GO:0046872
Tsu02g01420 560 CDD HMA 127 190 IPR006121 GO:0046872
Tsu02g01420 560 Pfam E1-E2 ATPase 425 552 - -
Tsu02g01420 560 ProSiteProfiles Heavy-metal-associated domain profile. 125 191 IPR006121 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01420 Tsu-Chr2 12364728 12370864 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01420 1 548 Primary Pumps ATPases AT5G44790 69.542 0.0 778
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01420 K17686 - gmx:100798164 866.685