Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01413 ATGGCTGAAAATCATTCTCATTCTCAATCTCCCATACCATGTAATAATGATCACAACCATGATCATGAACAAGTAGCTGGTTTTGATTGGATGGTTCTTGTAGCAGCTATTCTATGTGCCATTGTTTGTGCTCTTGGTCTTAATACTATGTTACAATGTGCTTTTCAATGTCTTGGTCGTGTAGTAACTGAACCTATTCAATGGATTACTACTAGGAGGTTGAATTCAGgaatcaagaaaaaagaaatagtagCTTTACCAACTTCAACATATTGTGATCATGATTTAGGTTCTCCATCTTCAGCTTCtagttgtgttatttgtttGGCTGAATTCTCTAATGGAGATCAAATAAGGTTTTTACCAAAATGCAATCATTATTTTCATGTTGTTTGTATTGATAAGTGGTTGTTGTCTCATTCTTCTTGTCCTACTTGCAGGCATCTTACTCAAGTCTAG 459 0.329 MAENHSHSQSPIPCNNDHNHDHEQVAGFDWMVLVAAILCAIVCALGLNTMLQCAFQCLGRVVTEPIQWITTRRLNSGIKKKEIVALPTSTYCDHDLGSPSSASSCVICLAEFSNGDQIRFLPKCNHYFHVVCIDKWLLSHSSCPTCRHLTQV 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01413 152 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 12 149 - -
Tsu02g01413 152 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 67 151 IPR013083 -
Tsu02g01413 152 SMART ring_2 105 146 IPR001841 -
Tsu02g01413 152 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Tsu02g01413 152 Pfam Ring finger domain 104 147 IPR001841 -
Tsu02g01413 152 PANTHER OS06G0666500 PROTEIN 12 149 - -
Tsu02g01413 152 SUPERFAMILY RING/U-box 104 149 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01413 Tsu-Chr2 12329075 12329533 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01413 29 148 C3H Transcription Factor Family AT3G10910 40.310 3.61e-29 103
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01413 - K19040 cam:101507208 260.766