LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu02g01402	ATGGCACCTTTGTTATATTACTCACTCCTTTCCCTTACATTCATTTTAACCTTGAAACTTTCactccaaaaaataaattcaaaaaaccTTCCTCCAAGTCCATTAATAACTCTTCCCATAATAGGAAACCTTCACAACATAAACCTCCCACTTCACCGTTCACTTCAAAACCTTTCACAAAAATACGGCGACATCTTCACCCTATGGTTTGGTTCACGTCGTGTTGTCGTCATCTCCTCCCAAGCCCTATTTCAACAATGTTTAACCAAACACGACGTTGTTTTATCAAACCGACCCCGCTTTCTCACCGGAAAACATTTCTTCTACAATTACACTAGCTTAGACTCTGTCCCATATGGCGACCACTCGCGTAATCTACGCCGAGTCATCACCGTTGATGTCCTCTCAACACAACGTCTCAACTCCTTCATAGAAACGCGAAGAAAAGAGGCGTTGAAGCTTATAACAAAACTAGCTAAGGACACGTGTGAGGAATTCACACGTGTCGAGTTGAGGACGAGGCTAACAAATATGACATTTGACATTATGACGAGAATGGTTGCCGGTGAAGCTACGGAAGGGAAGAAgtttaaaaatttgataaatgAAATGATGCCGTTGCTTGGGGCAAGTAATAAGGGAGATTTTGTGCCTTTAATTaggttgtttgattttaatggCGTGGTTAAGAGGATGAAGGATATTGGCAAGAGAGGTGATTCTTTTGTGCAAGGAATTGTTGATGAGATTAGAAGTGGGAAGCATGGTCATGGTAATAACATGGTACAACATCTTTTGACTCTACAAAAATCTCAACCTGAGAATTATTCTGATGTGATTATCAAAGGACTTATTCAGGGTATGTTTCTTGGTGGAACTGACACATCAGCTGTGACTCTAGAGTGGGCAATATCCGCTTTATTAAATAACCCACATGTATTGAAGAGAGCAAAAGATGAAATAGACACTCAAATAGGATATGATCGTTTGGTAGATGAGTCAGACATTCCAAATCTTCCATacattcaaaatattatctACGAGACGCTTCGATTATACTCTCCTGCTCCGTTACTATTGCCTCGTTATACTTCAGACAAGTGCAATTTTGAAGGATTTACTATTCCAAGTGACACCATAGTGTTGATTAATGCATGGGCCATTCAAAGAGATCCCAAAATTTGGAGTGATCCTTCATGTTTTAAGCCAGAGAGATTTGAAAAAGAAGGAGAAGCAAAAAAGGTAATTGCATTTGGTTTTGGAAGAAGGATTTGTCCAGGAATGGGTTTGGCATATCGTACAATGGGCTTGACTTTGGGATTATTGATTCAATGCTTTGAATGGAAACGAATAACTCATGAAGAAGTGGATATGACTGAATGTAAAACAGGACTCGTGATGGAAAAGCTTAATCCATTAGAAACAATGTGTAAGGCAAGACCAATCATCAAGAAAGTTATCCAAGAATTAAATATCTAG	1479	0.3759	MAPLLYYSLLSLTFILTLKLSLQKINSKNLPPSPLITLPIIGNLHNINLPLHRSLQNLSQKYGDIFTLWFGSRRVVVISSQALFQQCLTKHDVVLSNRPRFLTGKHFFYNYTSLDSVPYGDHSRNLRRVITVDVLSTQRLNSFIETRRKEALKLITKLAKDTCEEFTRVELRTRLTNMTFDIMTRMVAGEATEGKKFKNLINEMMPLLGASNKGDFVPLIRLFDFNGVVKRMKDIGKRGDSFVQGIVDEIRSGKHGHGNNMVQHLLTLQKSQPENYSDVIIKGLIQGMFLGGTDTSAVTLEWAISALLNNPHVLKRAKDEIDTQIGYDRLVDESDIPNLPYIQNIIYETLRLYSPAPLLLPRYTSDKCNFEGFTIPSDTIVLINAWAIQRDPKIWSDPSCFKPERFEKEGEAKKVIAFGFGRRICPGMGLAYRTMGLTLGLLIQCFEWKRITHEEVDMTECKTGLVMEKLNPLETMCKARPIIKKVIQELNI	492

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu02g01402	492	ProSitePatterns	Cytochrome P450 cysteine heme-iron ligand signature.	418	427	IPR017972	GO:0005506\|GO:0016705
	Tsu02g01402	492	Pfam	Cytochrome P450	31	470	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g01402	492	SUPERFAMILY	Cytochrome P450	31	480	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g01402	492	PANTHER	CYTOCHROME P450, FAMILY 81, SUBFAMILY D, POLYPEPTIDE 2-RELATED	7	485	-	-
	Tsu02g01402	492	PANTHER	FLAVONOID 3'-MONOOXYGENASE-RELATED	7	485	-	-
	Tsu02g01402	492	PRINTS	P450 superfamily signature	344	355	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g01402	492	PRINTS	P450 superfamily signature	416	425	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g01402	492	PRINTS	P450 superfamily signature	425	436	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g01402	492	PRINTS	P450 superfamily signature	291	308	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
	Tsu02g01402	492	Gene3D	Cytochrome P450	23	488	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu02g01402	Tsu-Chr2	12214938	12217612	Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Tsu02g01402	10	489	Cytochrome P450	AT4G37340	50.407	1.96e-175	501

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu02g01402	K13260		K22932	gmx:100784120	630.943

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