Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01401 ATGGATCTTAAGAATAAGAAACCAAACGTAGAATTAAATCACACGCCAGATCAAGATCAACTGGCAAGACTTGAACgAACGTACCGGCATTGTTCTTATCCTAATAATGTTAATGATGTTCGACTTGGTGGGAAAGTTGTGCTTGACTCAACAATTGTGCAACAATGGCAACAAAATAAACTCAAGGAAGCAACAGAAGAAGGTTCTCAAGAAAGTGTTCAAGATGATGTTACTTGTGCGTCTGATAAAAGTGTTCAAGACGCTATTACTCATTCGCCTCAACAAAATTCGGATTTGCTCCAGTCTATTGATGAAATCCTTAAAATAGATATCGCTAAAGATTTCGCAGGAATTGCTGACTTACTTAGCGATGATAATCATGTTCCGGGTTCTGCTCCTACTTCTGATGCTCGTGATGTCTCTGCAGAGATGAATCCAATTGAAGGAAAATGGATTGTGATGAAGCTTGGTGAAAGATTGGTAAAAATATTTCATGATGCATTGAATAATATGCCATCAAACAAAGATTTTCCAGAATTGATTAATACACTGGATAATGATGGTGTAAGGGTAAATGTTCGAAAATGCCGAGATCCAGGCACTGAAAATGGCGCAATTCTCACCGCGACTACCTCCTTTTGGCTTTCTTGCACACCTCAGcatgctttcaattttttgaaagaCAATAGTAGAAGATTTCAGTGGGATATTCTATGTGAAGGCCATCATCAAGTGGAAGAACTTCACCGTATCACATATGGAACAAATCCTGGAAATTTTACTTCCATTATTAggACATTGAATCCTGAGGATAAAGATATGAGGATACTACAAGAGTGTTATGCTAATGGTATGGAATCAGGGCTGGTATATTGTACAATTGATACAGAAACAATGAATTGTGCAATTCGCGGGGAGGATTGTTCGATGTTGCCTCTGCTTCCATCTGGTTTCACTATAACCGGGGGTGGCCGATCTTCCTGTGATAACAAGGGGGAAGAAGCTGGCGTCTCGTGTGAAGGTTCAGTTGTAACTGTGGCGTACCAATTGCTGATCGGTACACCAGCTGAAATTGATAATCCAGATCTGGATGCAGTGAAGAAAATGAACAAATTTGTTACTTCAACGGTGAACAATATCAGGCATGCTTTGAAGTGTTCGTCTTTTTAA 1170 0.3872 MDLKNKKPNVELNHTPDQDQLARLERTYRHCSYPNNVNDVRLGGKVVLDSTIVQQWQQNKLKEATEEGSQESVQDDVTCASDKSVQDAITHSPQQNSDLLQSIDEILKIDIAKDFAGIADLLSDDNHVPGSAPTSDARDVSAEMNPIEGKWIVMKLGERLVKIFHDALNNMPSNKDFPELINTLDNDGVRVNVRKCRDPGTENGAILTATTSFWLSCTPQHAFNFLKDNSRRFQWDILCEGHHQVEELHRITYGTNPGNFTSIIRTLNPEDKDMRILQECYANGMESGLVYCTIDTETMNCAIRGEDCSMLPLLPSGFTITGGGRSSCDNKGEEAGVSCEGSVVTVAYQLLIGTPAEIDNPDLDAVKKMNKFVTSTVNNIRHALKCSSF 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01401 389 SUPERFAMILY Bet v1-like 184 349 - -
Tsu02g01401 389 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 142 386 - -
Tsu02g01401 389 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 142 386 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01401 Tsu-Chr2 12194272 12197910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01401 133 388 Homeobox Transcription Factor Family AT1G17920 35.632 5.77e-41 151
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tsu02g01401 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01401 K09338 - rcu:8266520 184.496