Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01399 ATGAGTTCAGGTTCAGGAGACAAGCAAGATATGCATGATCAAACTGGTTGCTTTGATCCCGACACAATGGTTGAAGGTATTGAAAACTCTCAGAAAGATTACAACACAAACAACATTAATATTAATCTTGAAGAGGATTTCAAGCCTTCTGTGGAAGAGGAACTCTCTTATCACAATCAACAACACCTTGAAGATGTTTCCGCCTATACAAATGGTTTCACTCCTTCATCAGTAGATATTGAACAGCAAAATCTTGGTTTGAACATTGGGGGCTCTTACAATAACAGCAGCAACAACGACATGGATAATCATTTGGCGCATGAGGTGTATCAGAACTCGACTTGGGACCCTAGTGTTCAGGATATGGACTATATGAATCACCAAGAACACCACCAACTATCTGAACAACAATATCAACAATTTGTTGAGACACAAAACCATAACCAAAGCTATAATCCCTCTGGCATACTAGACCCTTCTTACTCTTCACCCGATCTCCTTAATCTTCTCCGTTTACCGAGATGTTCAGCTTCATCTTTGCTCACAACTCCACCCAACATTTGCTTGACAAACCCAACTCAAAAAGCACCTAATTTTCATAACTCAATGAGTTTTCTTGGAGACCTTCCAATAGGATCATCAGATAATACAAGTGGATCATCAGTTTTGTATGATCCTCTATTTCCTTTGAACCTTCCTCCACAGCCACCAGCTCTTAGAGAATTGTTTCAATCTCTCCCTCACGGCTATAGCATGCCGACAAGTTCAAGGAATGGTTCTCTTTTCGGTGGAGGGGATGAGATGGAGGGAGATGGAGACATGGGAGTGCTGGAATTCAATAGGGTCAATGCTTCTGTTGGCAAAGGAAGGGGAGGAAAAGCTACAAAACACTTTGCAACTGAGAAACAAAGAAGAGAGCAGTTGAATGGAAAGTACAAAATCTTGAGGAGTCTCATCCCAAATCCCACCAAGGTTGATAGAGCATCAGTGGTTGGAGATGCTATTGAGTATATAAGAGAGCTGATTAGAACTGCGAATGAGCTGAAATTATTGGTGGAGAAGAAAAGACATGGGAGGGACATGTCTAAGAGACTTAAAACTGAAGATGATGCTGCTGAAAGCTGTAACATAAAGCCTTTTGGTGATCCAGATGGAAGCATAAGGACCTCATGGCTGCAGAGGAAATCCAAAGACAGTGAGGTTGATGTCCGGATTATCGACGATGATGTTACAATCAAACTGTTTCAGAGGAAGAAGGTTAATTGTCTGCTGTTTGTGTCCAAAGTTCTTGATGAACTTCAGCTGGAACTTCACCATGTTGCAGGTGGACATGTTGGTGAATATTGTAGTTTCTTGTTCAATAGCAAGGTAACTGAAGGTTCATCAGTTTATGCAAGTGCTATAGCCAACAGGGTGATTGATGTTCTGGACACTCAATATGCAGCAGGAGTTCCACCTACAAGTAGGCTGTAA 1473 0.4148 MSSGSGDKQDMHDQTGCFDPDTMVEGIENSQKDYNTNNININLEEDFKPSVEEELSYHNQQHLEDVSAYTNGFTPSSVDIEQQNLGLNIGGSYNNSSNNDMDNHLAHEVYQNSTWDPSVQDMDYMNHQEHHQLSEQQYQQFVETQNHNQSYNPSGILDPSYSSPDLLNLLRLPRCSASSLLTTPPNICLTNPTQKAPNFHNSMSFLGDLPIGSSDNTSGSSVLYDPLFPLNLPPQPPALRELFQSLPHGYSMPTSSRNGSLFGGGDEMEGDGDMGVLEFNRVNASVGKGRGGKATKHFATEKQRREQLNGKYKILRSLIPNPTKVDRASVVGDAIEYIRELIRTANELKLLVEKKRHGRDMSKRLKTEDDAAESCNIKPFGDPDGSIRTSWLQRKSKDSEVDVRIIDDDVTIKLFQRKKVNCLLFVSKVLDELQLELHHVAGGHVGEYCSFLFNSKVTEGSSVYASAIANRVIDVLDTQYAAGVPPTSRL 490
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01399 490 PANTHER TRANSCRIPTION FACTOR BHLH91 11 487 IPR045895 GO:0006355|GO:0048658
Tsu02g01399 490 PANTHER TRANSCRIPTION FACTOR BHLH91 11 487 - -
Tsu02g01399 490 Gene3D - 290 368 IPR036638 GO:0046983
Tsu02g01399 490 CDD bHLH_AtMYC1_like 297 363 IPR045896 -
Tsu02g01399 490 Pfam Helix-loop-helix DNA-binding domain 295 341 IPR011598 GO:0046983
Tsu02g01399 490 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Tsu02g01399 490 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 290 359 IPR036638 GO:0046983
Tsu02g01399 490 SMART finulus 298 347 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01399 Tsu-Chr2 12184450 12186408 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01399 11 485 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31210 36.739 1.72e-87 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu02g01399 HLH 4e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01399 - - gmx:100782512 660.988