Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01390 ATGAAGAGTTCAACATTTCTTATAGTGGTTTTACTCCTTGTGTGTTTCATTTCAATGCCATTTCTAATAGTCTTTGGCCAAGAAGATTTAGATAAAGATACAACTTTGAGAATACTTTTGGAAGTGAAGAAATCTTTTGTTCAAGACccagaaaatgttttgagtgattgGTCAGAAGATAACACAGATTACTGTAGTTGGAGAGGTGTTTCATGTGGTTTGAACTCTTTGGTTGATGACTCGGTGAATGTAGTGGGACTTAACCTTTCTGACTCGTCACTCACTGGGTTAATATCACCTGAACTCGGTCGTTTGAAAAATTTGCTCCACCTTGATCTTTCTTCAAATAGTCTCACTGGTCCCATTCCAACTAACCTCTCTAGCCTTGTTTTATTGGAATCTCTGCTTCTGTTTTCTAACCAACTCAATGGTTCTGTTCCCACTGTGTTTGGCTCGCTCACGAGTCTCCGAGTCATGCGACTCGGGGACAATGGGTTAACCGGTATGATTCCTGCGTCTCTTGGGAAATTGGTTAACTTGGTCAGTCTTGGTCTAGCTTCATGTGAACTCACTGGGTCGATTCCACATGAACTCGGTCAACTCAGTCTCTTGGAGAATCTGGTTCTGCAGGACAACGAGTTGATGGGTCCGATTCCATCCGAGTTAGGAAACTGCTCAAGTCTCACCGTCTTCACTGCTGCAAACAACAAACTCAATGGCTCAATTCCAAGTGAACTGAGTCAACTCAAGAATCTACAGCTTCTCAACCTTGGCAACAATAGTCTATCAGGGGAGATACCGAGTCAACTCGGTGATATGAGTGAACTCATTTACCTCAATTTCATGGGGAATCAGCTTGAGGGCACAATTCCACCGTCTCTAGCTCAACTGGGCAATCTTCAAAATCTCGACTTGTCTATGAACAAGCTTAGTGGAGGAATTCCAGAAGAGTTTGGCAACATGGATCAGCTAGGTTTCATGGTTCTGTCCGGTAACAACCTTAATAGTGTCATACCAAAAACAATATGTTCCAATGCAACAAATTTAGAACATTTGATGTTATCAGAAAATGGACTTTATGGTGAGATTCCAGCTGAATTGAGTCAATGTCAGTCACTGAAACAACTTGACTTGTCTAACAATTCACTCAATGGTTCCATACCTCTTGAGCTTTATGAGTTGGTGGAGTTAACTGATCTTTTGCTAAACAACAATAGTTTGGTTGGTTCAATCTCTCCTTTTATAGGAAACTTCAGCAACTTGCAGACACTTGCTTTGTATCACAACAATTTGAAGGGTGATCTTCCTAAAGAGATAGGAATGCTTGGGAAGTTGGAAATTTTATATCTTTATGATAATAGATTATCAGGGTCTATACCTATGGAGATTGGCAACTGTTCGAACTTGCAAATGATTGATTTCTTTGGAAACAGTTTCAAGGGGGAAATTCCCATCACTATTGGAATGTTGAAAGAGTTGAATTTCCTTCACCTTAGGCAGAATGAGCTTGTTGGTGAGATTCCTGCCACATTGGGGAACTGTCTTAAACTGAATATTCTGGATTTGGCTGACAATAAGCTCTCTGGTGCAATTCCTGCAACATTTGGATTCCTTGAGTCATTGGAGAAGCTCATGCTCTACAACAATTCTCTTGAAGGTAACCTTCCTCACCAATTGATAAATGTAGCAAACTTGACTAGAGTGAATCTTTCAAAGAATAGATTGAATGGTAGTCTAGTTGCATTGTGTAGCTCTCAatcatttctttcttttgatgTTACCGACAATGAGTTTGATGGTGAAATTCCACCTCAGCTGGGAAACTCGCCCTCCCTTTATAGGCTAAGATTAGGTAACAATAAATTTTCTGGTGAAATTCCAAGGACATTGGGAAAAATCCATGATCTGACATTGTTAGACCTGTCAGGAAATTCACTTACCCGACCAATACCAGCTGAGCTTTCTTTGTGCAATAAACTGACTTACATTGATTTAAACAGTAATCATCTTTATGGACAAATACCATCATGGCTTGGAAGTTTGCCACAATTAGGAGAGATTAAGCTCTCCTCCAATAATTTTTCGGGAACTCTTCCATTAGGCCTATTCAAATGTTCCAAATTATtagttctctctctaaatgaCAACTTTCTCAATGGAAGTCTCCCAGCTGATATAGGTGATCTTGCATATCTTAATGTCCTCCGACTTGACCGTAATAAGTTCTCGGGACCGATCCCTCCAGAGGTAGGAAAGCTGAGCAAGCTTTATGAGCTCCAGCTCTCCAGGAATAGCTTTAATGGTGAGATGCCAATTGAGATTGGAAAACTTCAAAATCTACAAACCATTTTAGACCTCAGTTACAATAATCTCTCAGGTGGCATACCACCTTCTCTAGGGACTATGTCAAAGTTAGAAACACTTGATCTTTCCCACAATCAACTTACTGGAAAAATCCCTCCACAAGTTGGTGAAATGAGCAGTTTGGAAAGGCTTGATCTCTCTTACAACAACCTTCAAGGGAAATTGGACAAGAAGTTCTCCAGGTGGCCAGATGAGGCATTTGAAGGGAACCTACATCTTTGTGGAAGCTCTCTTGACCGCTGCATCAGTGATGATATTTCCGGCAATGAGCATTCGGGCTTAAGTGAGTCATCGGTAGTGATAATATCTGTCCTTTCAACTTTGGCTGCAATTGCACTATTGATACTTTCAGTAAGAATCTTCTGCAAAAACAAGCAAGATTATTTAAGGGAAGACAGCAAAGTGACTTCTTATGTCTACTCTTCCTCTTCATCACAAGCGCAGAGACGGCCACTGTTCCAGCTAAGAGCTGCTGGAAAGAGGGATTTCAATTGGGAAGATATCATGGATGCAACAAACAATCTAAACGACGACTTCATGATTGGTTCAGGAGGTTCAGGGAAAATCTACAAAGCTGAATTGGCCACTGGAGAGACAGTTGCTGTCAAGAAGATTTCatcaaaagatgattttctgtTAAACCAAAGCTTCTTAAGAGAAGTCAATACACTGGGGAGAATAAAGCATAGACATTTGGTGAAGCTAATAGGGTTCTgtagcaatagaaacaaagGAGTAGGTTGGAATCTACTGATATATGAGTACATGGAAAATGGAAGCTTGTGGGATTGGCTACATGGAAAACCAGGAAATGCGAGCAAATTAAAGAAGAGACTTGATTGGGAGACAAGATTTAAAATTGCTGTGGGATTGGCTCAAGGAGTGGAGTACCTACATCATGATTGTGTCCCAAAGATCATTCACAGAGACATCAAATCCAGCAACATATTGCTAGATTCCAAAATGGAGGCACACTTGGGAGATTTTGGACTAGCAAAAGCACTCATTGAAAGTTATGATTCTAATACTGAGTCGAATTCTTGTTTTGCTGGATCTTGTGGCTACATGGCACCAGAGTATGCGTTCTCCCTGCGTTCAACAGAAAAAAGTGACATTTTCAGCTTCGGAATAGTTCTTATGGAACTTGTTAGTGGTAAAATGCCAACAAGTGACTTTTTTGGAGCTGATATGGACATGGTGAGATGGATGGAGATGCATATTGATATGCATGGCTCTACCCGTGAGAAATTGATAGATCCTGAACTGAAACCTCTTTTCCCTAGTGAAGAGTTTGCTGCTTTCCAAGTGCTTGAGATAGCTTTGCAATGCACCAAAGCTACACCACAGGAGAGACCATCTTCAAGGAAAGTATGTGATCTTCTCCTCCATGTATTCAGCAACAGAGCAATGGactttgagaaaatgaaattgGATCATCACAAGTAA 3810 0.3958 MKSSTFLIVVLLLVCFISMPFLIVFGQEDLDKDTTLRILLEVKKSFVQDPENVLSDWSEDNTDYCSWRGVSCGLNSLVDDSVNVVGLNLSDSSLTGLISPELGRLKNLLHLDLSSNSLTGPIPTNLSSLVLLESLLLFSNQLNGSVPTVFGSLTSLRVMRLGDNGLTGMIPASLGKLVNLVSLGLASCELTGSIPHELGQLSLLENLVLQDNELMGPIPSELGNCSSLTVFTAANNKLNGSIPSELSQLKNLQLLNLGNNSLSGEIPSQLGDMSELIYLNFMGNQLEGTIPPSLAQLGNLQNLDLSMNKLSGGIPEEFGNMDQLGFMVLSGNNLNSVIPKTICSNATNLEHLMLSENGLYGEIPAELSQCQSLKQLDLSNNSLNGSIPLELYELVELTDLLLNNNSLVGSISPFIGNFSNLQTLALYHNNLKGDLPKEIGMLGKLEILYLYDNRLSGSIPMEIGNCSNLQMIDFFGNSFKGEIPITIGMLKELNFLHLRQNELVGEIPATLGNCLKLNILDLADNKLSGAIPATFGFLESLEKLMLYNNSLEGNLPHQLINVANLTRVNLSKNRLNGSLVALCSSQSFLSFDVTDNEFDGEIPPQLGNSPSLYRLRLGNNKFSGEIPRTLGKIHDLTLLDLSGNSLTRPIPAELSLCNKLTYIDLNSNHLYGQIPSWLGSLPQLGEIKLSSNNFSGTLPLGLFKCSKLLVLSLNDNFLNGSLPADIGDLAYLNVLRLDRNKFSGPIPPEVGKLSKLYELQLSRNSFNGEMPIEIGKLQNLQTILDLSYNNLSGGIPPSLGTMSKLETLDLSHNQLTGKIPPQVGEMSSLERLDLSYNNLQGKLDKKFSRWPDEAFEGNLHLCGSSLDRCISDDISGNEHSGLSESSVVIISVLSTLAAIALLILSVRIFCKNKQDYLREDSKVTSYVYSSSSSQAQRRPLFQLRAAGKRDFNWEDIMDATNNLNDDFMIGSGGSGKIYKAELATGETVAVKKISSKDDFLLNQSFLREVNTLGRIKHRHLVKLIGFCSNRNKGVGWNLLIYEYMENGSLWDWLHGKPGNASKLKKRLDWETRFKIAVGLAQGVEYLHHDCVPKIIHRDIKSSNILLDSKMEAHLGDFGLAKALIESYDSNTESNSCFAGSCGYMAPEYAFSLRSTEKSDIFSFGIVLMELVSGKMPTSDFFGADMDMVRWMEMHIDMHGSTREKLIDPELKPLFPSEEFAAFQVLEIALQCTKATPQERPSSRKVCDLLLHVFSNRAMDFEKMKLDHHK 1269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01390 1269 SUPERFAMILY L domain-like 43 387 - -
Tsu02g01390 1269 SMART serkin_6 963 1254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01390 1269 Gene3D Ribonuclease Inhibitor 748 870 IPR032675 -
Tsu02g01390 1269 Gene3D Ribonuclease Inhibitor 482 584 IPR032675 -
Tsu02g01390 1269 ProSitePatterns Serine/Threonine protein kinases active-site signature. 1094 1106 IPR008271 GO:0004672|GO:0006468
Tsu02g01390 1269 ProSiteProfiles Leucine-rich repeat profile. 804 826 IPR001611 GO:0005515
Tsu02g01390 1269 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Tsu02g01390 1269 SUPERFAMILY RNI-like 343 647 - -
Tsu02g01390 1269 Gene3D Ribonuclease Inhibitor 292 388 IPR032675 -
Tsu02g01390 1269 Gene3D Ribonuclease Inhibitor 189 291 IPR032675 -
Tsu02g01390 1269 Gene3D Ribonuclease Inhibitor 654 747 IPR032675 -
Tsu02g01390 1269 Gene3D Ribonuclease Inhibitor 33 188 IPR032675 -
Tsu02g01390 1269 ProSiteProfiles Protein kinase domain profile. 963 1254 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01390 1269 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE GSO1 4 1265 - -
Tsu02g01390 1269 Gene3D Ribonuclease Inhibitor 585 653 IPR032675 -
Tsu02g01390 1269 PRINTS Leucine-rich repeat signature 802 815 - -
Tsu02g01390 1269 PRINTS Leucine-rich repeat signature 373 386 - -
Tsu02g01390 1269 Gene3D Phosphorylase Kinase; domain 1 922 1043 - -
Tsu02g01390 1269 SUPERFAMILY Protein kinase-like (PK-like) 947 1249 IPR011009 -
Tsu02g01390 1269 Gene3D Ribonuclease Inhibitor 389 481 IPR032675 -
Tsu02g01390 1269 ProSitePatterns Protein kinases ATP-binding region signature. 969 992 IPR017441 GO:0005524
Tsu02g01390 1269 Pfam Protein kinase domain 968 1246 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01390 1269 SMART LRR_typ_2 681 705 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 753 777 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 802 824 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 394 418 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 249 273 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 490 514 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 105 128 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 633 657 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 297 320 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 129 152 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 347 370 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 153 176 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 321 345 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 177 201 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 442 466 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 538 562 IPR003591 -
Tsu02g01390 1269 SMART LRR_typ_2 826 857 IPR003591 -
Tsu02g01390 1269 SUPERFAMILY L domain-like 587 844 - -
Tsu02g01390 1269 Pfam Leucine rich repeat 610 670 IPR001611 GO:0005515
Tsu02g01390 1269 Pfam Leucine rich repeat 516 575 IPR001611 GO:0005515
Tsu02g01390 1269 Pfam Leucine rich repeat 782 839 IPR001611 GO:0005515
Tsu02g01390 1269 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 4 1265 - -
Tsu02g01390 1269 Gene3D Transferase(Phosphotransferase) domain 1 1044 1267 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01390 Tsu-Chr2 12090892 12094803 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01390 39 706 Receptor kinase-like Gene Family AT1G17750 37.537 2.00e-102 349
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu02g01390 Pkinase 3.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01390 - - gmx:100801889 2008.42