Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01388 atggcaTCATCAGAAGTTGAAATTGCTTCTTTTAATTTATCACAAAATCagaaaactcaaaaaacaaCATGGGTTTCAAGAGTTgctaaaaacaacaacaaccttggaaccttaaatttcaacaaaagatTTCATAATGTGTTTGGTGAGAAAGATGATTCTTCATTGTCTGCATTGGTTAGTCCAAGGCACTCGAATATCGTTGATCGATGGGCGGCTAGACAAGCTCAAGAAGTGGTGACAAATCTTGGAAAAAAGAATAATGAGGATGCTGATAAGGTGTTTGATAAATTTCCTTCAAGATCGTCGAGTTTCAATTATAGGAGACGTAGAGAAGATTCTGTTTCGCCTCCTCGTTCTGATGCATCGTCTGAAAGCGAAAAAGCATCGGGCCTTGGTGCTTCTTCCCTTGTTCAGATTTGGGAAAAAAGGCTCAACCAATCCAATTGCACAAAACAAAATGTACCATTAGCTGGAAGAACTAATTCGGATTTGAGTTGTAATGACATTAATGCATGTTCTGTGGAAGATCATGGTAGGGTATCAGAAGAAGAGGAATCCTTTGATGAACAATTTACATGTTGGGAATATGATAAAACAAAAGTTAGTACTTATCAAAAGTGTTTGCCAAAAGTGAAGTGCAATTCAGATGCTGCTGAAAGTGAGAAGATCAAGGTTGCTGATATTATAAAGAGACTATGCGTTGACAATGATCAAGAGTTAAGTAATGGTGTGACAAGTTCTCCATATAGAGAGCGTGATTGTGTTTCCACACCGAAACAATTAACGGAACATAGAAGTTTTGGTAAGGTTAGAAGCCACCCACGAATTAGGGGGCGCCAAGCATTCAATGATTTGATGATGCATTTTGAGTGTGATCGACATGGAGAGCTCAACAATCTTGCTGAACGAGGCGCTGTTTCTAAGTTCACACAAAGAGGTTGTATTCAGTCATTGCTTCGACTTAGATTATTACAACGTGGAGTAGCAGTTTTTGATCCATCTCGCCCGAAATCAACAGGACATGGAGGGAATAAACAAGAATGCCCGAAATCAACAGGACATGAAGggaataaacaacaacaacaacaacaacaacaacaacaggaAGGATCAACAGGACATGAAGGGAataagcaacaacaacaacaacaacaacaacaacaagaaggATCAACAGGACATGAAGGGAATAAACAACAGCAAGGATCAGTAATTATGCAACTAAAATTTGACACAAGAGATGAACAGAGAATCTCATCCCAAAAAGAAGTCACTGATATCCATTGTAAGAAACATACAGAAAATCCTATGTCTCAAACTAATGCATGTGTAAAAGAAGAAGGGCATCTAAGTTGTGGTTTTGAAGCTCGAAATGATGATCCAAAAGAAACTGTCGAGGAATCTTCACCGAAGgttgattcaaattcaaatgagATGGTTGATGAAGTAGAGGCAAGAGACCAACAATTATATGATACTATTGAAACCGACTACAACGAGATATTAGAAGAGAAAGAGTATAGTGACTATAATTATGATGAAACTACAGCAAGTTATGACTGGATCAGTCCTATTTCTCGGCCTAAAAGCTATTGGGAAAAACTCAGGCAAGAATGGTATAGGAAAATACTTGACTTTGGTTCAAGCAATGATGAGAGACGCGAACTCCTTCAAagAAAAACAGTTTCAACTGTCCTTTGTAGCGGTTTTCGAGAAAGGATGGATAAATTGATGAAGTCTCACGTGGGAACACAAACACACTTAGTCAATAATCAATATGACGAGGAAGATCCAGAAGAGAGTATGGAAAAATTGATGGCATTTTATTATGATCGCTTGCGCGTTAGCGGCAGTTCCGAAGAAGATGGAAAAGATACAAACGAAAAAGAAGTGTCAGAGGAAGATGAATGCATCAATAGTGGTTCAGATCATGAACTTGGTGATTGTCATAGTGGTTCAGATCATGAACTTTGTGATTGTTCACCATCAATACACACACCATCCTCAACAACATGGAGTTATAGAGATACCGACGTCGGGGATGATTCTGCTAGAGCTGCATTTGAATCTTCACCATTGCATTCTCAACCTTTCTATCAAGATAGTACACAATACTCTTCACCCGCAAATCCGACTTCAATTGAAATGGAAATCATATACGATTTGCGAGCGCAAATGGAACTACTCTATCAAGAGATGTCCGAGCTAAGGAAAACACTAAAAAATTGTACAGACATGCAGATGCAAATGCAACTACAACAATCCCAGAACCAAGAGGTTCACAAAGTTAAAGGAAAGAAAGGCagtaaaaagaaatcaaagaaaggaAATTGTTGTATTTGCAATGAAAATAAAGTAAACGCAGTTTTATACAgATGTGGACACATGTGTGCATGTATCAAATGTGCCAAAGAGTTGCAATGGAAAAATGGAAAATGTCCAATATGTCAAGTTGCAATAATAGATGTTGTCAAAGTACATGCCAACACATAA 2496 0.3542 MASSEVEIASFNLSQNQKTQKTTWVSRVAKNNNNLGTLNFNKRFHNVFGEKDDSSLSALVSPRHSNIVDRWAARQAQEVVTNLGKKNNEDADKVFDKFPSRSSSFNYRRRREDSVSPPRSDASSESEKASGLGASSLVQIWEKRLNQSNCTKQNVPLAGRTNSDLSCNDINACSVEDHGRVSEEEESFDEQFTCWEYDKTKVSTYQKCLPKVKCNSDAAESEKIKVADIIKRLCVDNDQELSNGVTSSPYRERDCVSTPKQLTEHRSFGKVRSHPRIRGRQAFNDLMMHFECDRHGELNNLAERGAVSKFTQRGCIQSLLRLRLLQRGVAVFDPSRPKSTGHGGNKQECPKSTGHEGNKQQQQQQQQQQEGSTGHEGNKQQQQQQQQQQEGSTGHEGNKQQQGSVIMQLKFDTRDEQRISSQKEVTDIHCKKHTENPMSQTNACVKEEGHLSCGFEARNDDPKETVEESSPKVDSNSNEMVDEVEARDQQLYDTIETDYNEILEEKEYSDYNYDETTASYDWISPISRPKSYWEKLRQEWYRKILDFGSSNDERRELLQRKTVSTVLCSGFRERMDKLMKSHVGTQTHLVNNQYDEEDPEESMEKLMAFYYDRLRVSGSSEEDGKDTNEKEVSEEDECINSGSDHELGDCHSGSDHELCDCSPSIHTPSSTTWSYRDTDVGDDSARAAFESSPLHSQPFYQDSTQYSSPANPTSIEMEIIYDLRAQMELLYQEMSELRKTLKNCTDMQMQMQLQQSQNQEVHKVKGKKGSKKKSKKGNCCICNENKVNAVLYRCGHMCACIKCAKELQWKNGKCPICQVAIIDVVKVHANT 831
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01388 831 Coils Coil 720 747 - -
Tsu02g01388 831 PANTHER BNAC05G24000D PROTEIN 12 830 - -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 689 711 - -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 755 775 - -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 455 470 - -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 354 402 - -
Tsu02g01388 831 PANTHER BNAC05G24000D PROTEIN 12 830 - -
Tsu02g01388 831 SMART ring_2 779 817 IPR001841 -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 618 640 - -
Tsu02g01388 831 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 753 829 IPR013083 -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 333 402 - -
Tsu02g01388 831 Pfam Zinc finger, C3HC4 type (RING finger) 776 823 - -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 455 481 - -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 690 711 - -
Tsu02g01388 831 MobiDBLite consensus disorder prediction 105 131 - -
Tsu02g01388 831 ProSiteProfiles Zinc finger RING-type profile. 779 818 IPR001841 -
Tsu02g01388 831 SUPERFAMILY RING/U-box 778 823 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01388 Tsu-Chr2 12081265 12084716 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01388 765 831 C3H Transcription Factor Family AT3G06140 32.353 2.37e-06 48.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01388 - - mtr:MTR_4g094795 945.651