Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01378 ATGGTTGCCCAACAGCCACAACTTCAGATTCAGACTACACCTTCTCCTCAAGATGAAGCCTTGAAGAGGAACACCGATTGTGTTTACTTTCTTGCTTCTCCTTTGACATGCAAAAagGGAAATGAATGCGAGTACCGCCACAGTGAGTATGCTCGAGTCAATCCTAGAGATTGCTACTATTGGTTGAATGGTAACTGCTTGAATCCCAAATGTTCATTTCGTCATCCGCCTCTTGACGGATTGATAGGAACACCAACGGCAACCGCTGCTGCTGGACCATCGGTACCTGCGCCACAGATTGCAGCAACACCTGCAACGCATGCACCTTACAATTCTAGTAAACAAGCTGTCCCTTGCATTTTCTTCCAAAAGGGGTATTGCTTAAAAGGTGACAGATGTGCCTTCCAGCATGGACCGGTTCCTAACAATGGCAGTAAAATAGCTACACAGGGCTCAATGACCAACCAAGGAGCTGAGAATCCAAGTTTTAAGAAACCTTTTGGCGGTATTGAAAAACATACGCAGGAAAGGAAGACCTCACAAGGAAACGTTGCAACTTTTGGAGGTGCTGAAGCTAAACCTGTCCAAAAATTTGAAACTGCTCCgcagaaaaatatatttaaattggaGAAGCGTGTGGCACCGCCTCCTGCAGGGTTTGATAATGAGGCTTCAAGATTTAAGACACCTAGTTCTCCACCGCCGGCCAACGGGCCTAATGTATCCCGGTCTAATCGTGTGCATCAACCTCGTGTGCCGGATGATCACAGTTTCCATAGTGGTAAGGACAGCGACGAGTTTCTCAGAGAATCGTCTCCTGGGTTTGATGTTCTTGTAGCTGATGAGCTTAGGAATTCTGATTACTATCATGGGGAAGATGAATTTGGTAAAGCAAGAGGTCAAGATGAAAGAGGCCTAGACTCTCTGAATGAATTCGATGTAGGGCATTCTGATGATTATAGTTTAGCCGCTGATATTGATCGAGAAAGATTTCGTGGGCCTCAAGGTTATGACTCGTATGATCACATGCAAGAGCCATATGGTTGGGAGCCTAGAAAGGCATCAGCCCATATAGAAAGAAGAACTCATCACAGATCTGGCAGTCCTCCTGACAATGTTGAGGTGTCAGATCTTAGACACCGTTTATCCAAGCGCAGGAAGAGCAATGGTCTAAAATCTGTCGTCGCTCATGATTATGCCCTCGAAAGCCATGGTGAGGAGCGAAGTCATCGGTTCCCTCGGAAGGATTCACACCGGTTACCTTCGAATGAGAGACCTGTCAATAATCGTTTCCGAGGCAGAATAACACTTCCACCAAATGGTGGTGACAGTCACCTAGAGAGGGACTTAGACAGAGGAAGGGACTTAGACAGAGGAAGAGACTCAGACAGAGGAAGAATCGGTAGCAGGCTATCATCTGGAAGGCTGCGAACCCCTCCCGATGGAAGGGTCCACGATAGAATGAGAGGCAGGTTGTCAGATGATGAGAGGGGAAACTTCAGAGGCCGGTCGATGGGGGACCGAAGTGGGTTCTCTGCGCCTAAAAGTCTTGCTGAACTTAAATATGGGAGGAGCACTGATAATAATGAGCAACAATCATTAGGAAAGAGAAAAAGCTTCAGGGATCACCAGCCATATGAAGACGATGTACCATTTGAAGGTCCGAAACCTCTTAGTGAAATTCTGAAAGAGAAGAAAGGAGTCGGAGCTGGCGAAGCCTCCTCCCAGAGTCGCAAATCAGCCTTCAATAACAATGAAGGAATTACCGAAAATGGAGCATTGCCCGAAACCGAAACCAAGGAAGACGAATCCAAGATTCAGGCTGCTGACGGAGTTGACAATACTGATGCAACTCACGGTCAATCATCCGAAGATGGAATGATATACGACGAAGCTGCCGAAGATCAGGAGTATGAAGGTGATGATCAAAGAGAGGAGGGAGACTATGAATATGAGCAAGGTGATGAGGAGTATGACTATGAACAAGTCGAGGAAGGCGAGAATCAAGAGCAAGAATATATGGAAGATGAAGATGGGGATGACTTTGCCAAGAAGATTGGTGTTGTTCTTTCATAA 2076 0.4595 MVAQQPQLQIQTTPSPQDEALKRNTDCVYFLASPLTCKKGNECEYRHSEYARVNPRDCYYWLNGNCLNPKCSFRHPPLDGLIGTPTATAAAGPSVPAPQIAATPATHAPYNSSKQAVPCIFFQKGYCLKGDRCAFQHGPVPNNGSKIATQGSMTNQGAENPSFKKPFGGIEKHTQERKTSQGNVATFGGAEAKPVQKFETAPQKNIFKLEKRVAPPPAGFDNEASRFKTPSSPPPANGPNVSRSNRVHQPRVPDDHSFHSGKDSDEFLRESSPGFDVLVADELRNSDYYHGEDEFGKARGQDERGLDSLNEFDVGHSDDYSLAADIDRERFRGPQGYDSYDHMQEPYGWEPRKASAHIERRTHHRSGSPPDNVEVSDLRHRLSKRRKSNGLKSVVAHDYALESHGEERSHRFPRKDSHRLPSNERPVNNRFRGRITLPPNGGDSHLERDLDRGRDLDRGRDSDRGRIGSRLSSGRLRTPPDGRVHDRMRGRLSDDERGNFRGRSMGDRSGFSAPKSLAELKYGRSTDNNEQQSLGKRKSFRDHQPYEDDVPFEGPKPLSEILKEKKGVGAGEASSQSRKSAFNNNEGITENGALPETETKEDESKIQAADGVDNTDATHGQSSEDGMIYDEAAEDQEYEGDDQREEGDYEYEQGDEEYDYEQVEEGENQEQEYMEDEDGDDFAKKIGVVLS 691
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01378 691 MobiDBLite consensus disorder prediction 534 567 - -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 479 503 - -
Tsu02g01378 691 SMART c3hfinal6 113 139 IPR000571 GO:0046872
Tsu02g01378 691 SMART c3hfinal6 22 49 IPR000571 GO:0046872
Tsu02g01378 691 SMART c3hfinal6 54 77 IPR000571 GO:0046872
Tsu02g01378 691 MobiDBLite consensus disorder prediction 573 592 - -
Tsu02g01378 691 ProSiteProfiles Zinc finger C3H1-type profile. 21 50 IPR000571 GO:0046872
Tsu02g01378 691 SUPERFAMILY CCCH zinc finger 114 138 IPR036855 GO:0046872
Tsu02g01378 691 MobiDBLite consensus disorder prediction 288 691 - -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 444 470 - -
Tsu02g01378 691 Pfam RNA-binding, Nab2-type zinc finger 118 138 - -
Tsu02g01378 691 Gene3D - 105 181 - -
Tsu02g01378 691 Gene3D - 13 78 - -
Tsu02g01378 691 Pfam Zinc-finger containing family 22 76 IPR041686 -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 345 381 - -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 248 269 - -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 399 425 - -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 148 269 - -
Tsu02g01378 691 ProSiteProfiles Zinc finger C3H1-type profile. 113 140 IPR000571 GO:0046872
Tsu02g01378 691 ProSiteProfiles Zinc finger C3H1-type profile. 52 78 IPR000571 GO:0046872
Tsu02g01378 691 PANTHER ZINC FINGER CCCH-TYPE-CONTAINING 11A 6 691 - -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 628 677 - -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 595 609 - -
Tsu02g01378 691 MobiDBLite consensus disorder prediction 288 336 - -
Tsu02g01378 691 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 6 691 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01378 Tsu-Chr2 11950403 11954100 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Tsu02g01378 zf-CCCH_3 5.3e-12 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01378 - - gmx:100787836 848.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu02g01378 02 11950403 11954100 Tsu02g01378 02 11950403 11954100 ECH