Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01371 ATGACCCATATAGTTAGGGAGGTCGAGAAACCTGGTTCAAAGCTTCATAAGAAAGAGACATGTGAAGCTGTTACTATCATTGAAACTCCTccaattgttgttgttggagtGGTAGGATACGTGAAGACACCACGAGGCCTTCGCACATTGAATACTGTTTGGGCTCAGCATCTTAGTGAAGATATCAAGCGTCGTTTTTACAAGAACTGGTGCAAATCAAAGAAGAAGGCTTTTACCAAATATaccaaaaaatttgaaactgaggaaggaaagaaagaaattcaatcTCAGCTTGAGAAATTGAAAAAGTATGCCACTGTTATCCGTGTTCTTGCTCATACTCAGATAAGGAAGTTGAAGGGTCTAAAACAAAAGAAAGCTCATTTGATGGAGATCCAAGTTAATGGTGGAACAATTAGCCAGAAGGTGGACTATGCATATGGTTTCTTTGAAAAGCAAATCCCTGTTGATGCTGTTTTTCAAAAGGATGAGATGATAGATATCATTGGAGTGACTAAAGGTAAAGGTTATGAAGGTGTGGTAACTCGTTGGGGCGTCACTCGCCTTCCACGAAAGACACACAGAGGTCTCAGGAAGGTTGCCTGTATTGGTGCCTGGCACCCTGCTCGCGTTTCTTTCACAGTTGCCAGGGCTGGTCAGAATGGATATCATCATCGTACTGAGTTGAATAAGAAGATCTACAAGGTTGGCAAGACGGACCAAGAATCACATACAGCCATCACTGAATTTGACAGGACTGAGAAGGATATTACGCCTATGGGTGGATTCCCTCATTATGGTATTGTGAATCACGATTATCTTATGATCAAGGGATGCtgtgttggaccaaagaagcgGGTTGTCACTCTTCGTCAATCACTACTCAAGCAGACATCTCGATTGGCTCTTGAAGAGATCAAACTGAAGTTCATTGACACCTCCTCCAAGTTTGGACATGGCCGCTTCCAGACTACCCAGGAGAAACAAAAGTTTTATGGTCGGTTGAAGGCGTAA 1014 0.3945 MTHIVREVEKPGSKLHKKETCEAVTIIETPPIVVVGVVGYVKTPRGLRTLNTVWAQHLSEDIKRRFYKNWCKSKKKAFTKYTKKFETEEGKKEIQSQLEKLKKYATVIRVLAHTQIRKLKGLKQKKAHLMEIQVNGGTISQKVDYAYGFFEKQIPVDAVFQKDEMIDIIGVTKGKGYEGVVTRWGVTRLPRKTHRGLRKVACIGAWHPARVSFTVARAGQNGYHHRTELNKKIYKVGKTDQESHTAITEFDRTEKDITPMGGFPHYGIVNHDYLMIKGCCVGPKKRVVTLRQSLLKQTSRLALEEIKLKFIDTSSKFGHGRFQTTQEKQKFYGRLKA 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01371 337 Gene3D - 31 155 - -
Tsu02g01371 337 Gene3D Translation factors 1 333 - -
Tsu02g01371 337 ProSitePatterns Ribosomal protein L3 signature. 160 183 IPR019926 -
Tsu02g01371 337 Gene3D Ribosomal protein L3, domain 3 174 222 IPR044892 -
Tsu02g01371 337 PANTHER 60S RIBOSOMAL PROTEIN L3-1 1 337 - -
Tsu02g01371 337 Pfam Ribosomal protein L3 1 318 IPR000597 GO:0003735|GO:0005840|GO:0006412
Tsu02g01371 337 PANTHER 60S RIBOSOMAL PROTEIN L3-RELATED 1 337 IPR045077 GO:0003735|GO:0005840|GO:0006412
Tsu02g01371 337 SUPERFAMILY Translation proteins 1 318 IPR009000 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01371 Tsu-Chr2 11912657 11914211 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01371 1 335 Cytoplasmic Ribosomal Protein Gene Family AT1G43170 85.970 0.0 595
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01371 K02925 - gmx:100792174 608.601