Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01336 ATGAAACTTCCCATTATTGTTGTTGTCGCAGCAACAACATCACTCGTTGCATTATTCATCATCGGATTCTTAATCTACCGGTATCTAAAAAAACCTACAACAAGAgacaaaactcaaaaacacgAAAACACATGTCTTCACTTTTCCATCGAAGAAATAAGAACCGCCACCAAAAACTTCAACGACAGTTTAATCATCGGAAACGGAGGATTCGGAAACGTTTACAAAGGAAACATTGAAAGATGTCACGCGCCGGTTGCCATTAAGCGGCTCAGACCGGGTTCAGATCAAGGCGCACATGAGTTCCGAACCGAAATCGAAATGCTCTCGCGGTTTCGTCACCCTCACTTGGTTTCTCTCATTGGTTACTGTAACGAAGGTGGAGAAATGATTCTCGTTTACGATTTCATGGCGCGTGGTACTTTACGTGATCATCTCTACGGTTCGGAAACTCCACTCTCGTGGAATCGACGGCTTGAAATTTGTCTTGGTGCAGCGCGTGGGATTCACTTTCTTCACGCGGGGGTTAATGACGACAAACGGATGGTTATTCACCGTGACGTGAAGAGTACTAATATTCTGTTGGATGAGAATTGGGTTGCGAAGGTTTCGGATTTCGGGTTATCGAAAGATGGGCCAAACGGGTCGACCCATGTTACAACTGATGTTAAGGGTAGTATCGGGTATTTAGATCCTGAATATTATGTGAGTCAATGGTTGAGTCAAAAATCTGACGTGTACTCTTTTGGTGTGGTTTTGTTGGAGGTATTGTGTGGGAGACCACCAATTAAGAGTACGGTGGACAAGCGTGAGGAGATTTTGGTGGCATGGTTTAAAAAGTGTTTTGAAGAAGGGAAAATTGATCGAACGGTTGATCCTGTTTTGAAAGGAACGATCAAGATGaagtgtttgatgaaatttgtTGAGGTTGCGTTGAGTTGTTTGCATCATCATGGAAAGCAACGGCCTTTGATGAGAGATGTTGTCATGGGGTTGGAGTGTGCGTGGAATTTGCAACATGGTGGGGGCCATGTTAAGGGAAAGGTGAAGGTTAGAAAGAGTGAGGAGGAGAAGGAAATGGGGTTGATCTTGAAGGAAATTGAGGGTGTGAGTTTTGGGAGAGTGGAGGAGTGTAGTAGTAGCAAGGGTACGACAATAACATCAACATGCAGTGAGGAGGAGCAAGCTTTGGTGATGGTTGGAGCTTTTCATGAGAGCTTGGATATCCCATAG 1233 0.4323 MKLPIIVVVAATTSLVALFIIGFLIYRYLKKPTTRDKTQKHENTCLHFSIEEIRTATKNFNDSLIIGNGGFGNVYKGNIERCHAPVAIKRLRPGSDQGAHEFRTEIEMLSRFRHPHLVSLIGYCNEGGEMILVYDFMARGTLRDHLYGSETPLSWNRRLEICLGAARGIHFLHAGVNDDKRMVIHRDVKSTNILLDENWVAKVSDFGLSKDGPNGSTHVTTDVKGSIGYLDPEYYVSQWLSQKSDVYSFGVVLLEVLCGRPPIKSTVDKREEILVAWFKKCFEEGKIDRTVDPVLKGTIKMKCLMKFVEVALSCLHHHGKQRPLMRDVVMGLECAWNLQHGGGHVKGKVKVRKSEEEKEMGLILKEIEGVSFGRVEECSSSKGTTITSTCSEEEQALVMVGAFHESLDIP 410
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01336 410 Gene3D Phosphorylase Kinase; domain 1 24 136 - -
Tsu02g01336 410 SUPERFAMILY Protein kinase-like (PK-like) 40 333 IPR011009 -
Tsu02g01336 410 SMART serkin_6 60 325 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01336 410 PANTHER OS07G0166700 PROTEIN 12 353 IPR045272 GO:0004714|GO:0006468
Tsu02g01336 410 CDD STKc_IRAK 66 333 - -
Tsu02g01336 410 PANTHER RECEPTOR-LIKE PROTEIN KINASE FERONIA 12 353 - -
Tsu02g01336 410 ProSiteProfiles Protein kinase domain profile. 60 337 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu02g01336 410 ProSitePatterns Protein kinases ATP-binding region signature. 66 89 IPR017441 GO:0005524
Tsu02g01336 410 ProSitePatterns Serine/Threonine protein kinases active-site signature. 183 195 IPR008271 GO:0004672|GO:0006468
Tsu02g01336 410 Pfam Protein tyrosine and serine/threonine kinase 66 330 IPR001245 GO:0004672|GO:0006468
Tsu02g01336 410 Gene3D Transferase(Phosphotransferase) domain 1 137 346 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01336 Tsu-Chr2 11635898 11637138 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01336 43 339 Receptor kinase-like Gene Family AT3G51550 59.197 1.05e-118 364
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_CrRLK1L-1 Tsu02g01336 PK_Tyr_Ser-Thr 4.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01336 - - cam:101489535 583.563