Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu02g01330 ATGGGAAGAGTACGCACAAAAACCGTCAAGAAATCCTCCCGTCAAGTCATCGAGAGATACTACTCTCGAATGACACTCGATTTCCACACCAACAAGAAAATCCTTGAAGAAGTTGCTCTGATTCCATCAAAGCGTCTCCGTAACAAGATCGCTGGATTCTCCACTCATCTCATGAAGCGTATCCAGAAAGGACCAGTTCGTGGAATTTCATTGAAGCTGCAAGAGGAAGAACGTGAACGTCGTATGGATTTCGTTCCTGAGGTCTCTGCTATTAAGACTGATTCCATCGAAGTTGATAAGGAAACCCTAGAAATGATTGCTGCACTTGGTATGGCGGAACTTCCTGGTGTTGTTCAGGTTGATCCAGTTCCGGTTCAGCAGGTTCCCTACGGCCGTGGTGCTGGTGCTCCTGGTGGAAGGAGTTTGCCGCCTCACAGAGCCACCGAGGTTGAGTTGCAATCATGGGAAGAGTACGCACAAAAACGGTCAAGAAATCCTCCCGTCAAGTCATCGAGAGTTGATAAGGAAACCCTAGACATGATTGCTGCACTCGGTATGGCTGAACTTCCTGGTGTTGTTCAGGTTGATCCAGTTCCAGTTCGACAGGTCCCCTTCGTTCGTGGTGTTGTAGAATAA 636 0.4796 MGRVRTKTVKKSSRQVIERYYSRMTLDFHTNKKILEEVALIPSKRLRNKIAGFSTHLMKRIQKGPVRGISLKLQEEERERRMDFVPEVSAIKTDSIEVDKETLEMIAALGMAELPGVVQVDPVPVQQVPYGRGAGAPGGRSLPPHRATEVELQSWEEYAQKRSRNPPVKSSRVDKETLDMIAALGMAELPGVVQVDPVPVRQVPFVRGVVE 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu02g01330 211 Gene3D - 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Tsu02g01330 211 Pfam Ribosomal S17 1 120 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tsu02g01330 211 PANTHER 40S RIBOSOMAL PROTEIN S17 1 136 - -
Tsu02g01330 211 SUPERFAMILY Rps17e-like 1 62 IPR036401 GO:0003735|GO:0005840|GO:0006412
Tsu02g01330 211 Hamap 30S ribosomal protein S17e [rps17e]. 1 63 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tsu02g01330 211 PANTHER 40S RIBOSOMAL PROTEIN S17 1 136 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tsu02g01330 211 PANTHER 40S RIBOSOMAL PROTEIN S17 170 208 - -
Tsu02g01330 211 PANTHER 40S RIBOSOMAL PROTEIN S17 170 208 IPR001210 GO:0003735|GO:0005840|GO:0006412
Tsu02g01330 211 ProSitePatterns Ribosomal protein S17e signature. 41 56 IPR018273 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu02g01330 Tsu-Chr2 11596106 11598614 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu02g01330 1 122 Cytoplasmic Ribosomal Protein Gene Family AT5G04800 87.705 2.38e-75 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu02g01330 K02962 - rcu:8271121 229.95